Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq174 86.0 8e-12 seq29 84.2 3e-11 >seq174 Length=97453 Score = 86.0 bits (94), Expect = 8e-12 Identities = 180/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 194581 GAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGAT 194640 |||| | | |||||||| || || | ||||| || | |||||||||||| ||||| Sbjct 51167 GAAACTTATATTTTTATGGGACCTATATATTATCAAAAATTAAAACACATGGTTCAGGAT 51108 Query 194641 AAAATGCATGCTAGAAGT-CATGGGCAAG-TAACTACTTTACATCGACAACCAAATTGTG 194698 ||||| |||||||| | | | |||| || ||| || | ||||||||| | | Sbjct 51107 AAAATACATGCTAGGGCTAGAGGACCAAGACAATTAC--TAACTAGACAACCAACTGAAG 51050 Query 194699 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCC 194758 || | || ||| ||||| ||| || ||||||||||||||| ||| || | | | Sbjct 51049 GTAGATCAAAAGAAGGAGGATTACGACTTGGAGAAATGGAAAGAGATTGCCTAATTGCAT 50990 Query 194759 ATGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCG 194818 |||||| || | || || ||||||| || | ||| | |||| | | | || Sbjct 50989 ATGGTGTTAGCAATTTACTACTTGAAAGATTGATGTTGAGTAGTGATGTGTGTGATGTAT 50930 Query 194819 ATGTTTGCACAGAATGTGGTATGAT 194843 || ||||| ||| ||||| ||||| Sbjct 50929 ATATTTGCCAAGACTGTGGCATGAT 50905 >seq29 Length=163906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 194587 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 194646 ||||| ||||| || || |||||||| || | | ||||| ||||| | ||||| || Sbjct 159790 AAAATATTTATTGGTCCTACTTATTATCAGAGATTGAAACATATGGTAGAAGATAAGATA 159731 Query 194647 CATGCTAGAAGTCATGGGCAAGTAACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 194705 |||||||||||| || | |||||| |||| ||||||||| ||| | || Sbjct 159730 CATGCTAGAAGTAGAGGACCTTTAACTATGATTAC-GAGACAACCAACAGAAGGTAGATC 159672 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT 194750 || ||||||| | ||||||| |||||||||| |||||||| Sbjct 159671 AAGAGATGGAGGTCTCCGATTTGGGGAAATGGAAAGGGACTGTAT 159627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632462055077920