Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq176 192 9e-44 seq129 134 2e-26 >seq176 Length=118070 Score = 192 bits (212), Expect = 9e-44 Identities = 181/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | ||||| || |||||||| || || || | ||||||||| ||| Sbjct 109674 TGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG- 109732 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| | |||||||| ||||| ||| ||| ||||| |||||||||||||| Sbjct 109733 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 109792 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || || ||||| ||||||||||| ||| ||||| ||| | |||||||| Sbjct 109793 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 109852 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || |||||||| ||| | || ||||| |||||||||||||||||| Sbjct 109853 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 109900 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || || ||||| || || || | ||||||||| ||| | Sbjct 109212 TGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCA- 109270 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | |||||||| ||||| ||| ||| ||||| ||||||||||||||| Sbjct 109271 GACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 109330 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| ||||||||||| ||| ||||| ||| | |||||||| Sbjct 109331 CAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 109390 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || |||||||| ||| | || ||||| |||||||||||||||||| Sbjct 109391 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 109438 Score = 174 bits (192), Expect = 2e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | ||||| ||||||||||| || || || | ||||| || | Sbjct 109443 TGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCGG 109502 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| ||||| ||| ||| ||||| |||||||||||||||| Sbjct 109503 ATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAAC 109562 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || |||||||| |||||||| || ||| ||||| ||| | |||||||| | Sbjct 109563 AAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAACA 109622 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || | || ||||| ||||||||||||||||| Sbjct 109623 TCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 109668 Score = 129 bits (142), Expect = 9e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 146057 AGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAATA 146115 ||| ||||| || || | ||||| || ||| ||||| ||| | |||||||| | Sbjct 109006 AGGTAAAACGATCACCTTGGATGTTGAGTCATCG-GATACGATTGAGAATGTAAAGGCGA 109064 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| || ||| ||||| || ||||| ||||| |||||| | || ||||| || || | Sbjct 109065 AAATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGC 109124 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 |||| || ||| ||||| ||| |||||||| || ||||| ||||| || | |||| Sbjct 109125 AATTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATT 109184 Query 146236 TAGTATTACGATTAAGAGGAGGT 146258 |||| |||||||||||||||||| Sbjct 109185 TAGTCTTACGATTAAGAGGAGGT 109207 >seq129 Length=280093 Score = 134 bits (148), Expect = 2e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||||||| |||||||||||| |||||||||||| | |||| || ||| || | Sbjct 41846 TGCAAATATTCGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGTA- 41904 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||| | ||| ||||| || ||| |||| ||||| | ||| || Sbjct 41905 GATACAATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGACGAA 41964 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| || ||||||||||| | | ||| |||| ||||| ||| Sbjct 41965 CAAAGATTAATTTTTGCGGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTACAAT 42024 Query 146211 ATACAAAAAGAATCGACT 146228 || || |||||||| ||| Sbjct 42025 ATCCAGAAAGAATCCACT 42042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786132162453280