Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq29 93.3 5e-14 seq174 82.4 1e-10 >seq29 Length=163906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 192500 ATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTAATAAATT 192556 |||| | ||||| || | ||||||||| ||||| || ||| | | | | | || Sbjct 161000 ATTATACTATCCTCAGAGACCACTTGTATGTACCAAAGTTATGGAATACCTACGTT--TT 160943 Query 192557 AGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAA 192616 ||| ||| ||| |||||| ||||| || |||||||| |||||||| || ||||| Sbjct 160942 AGA-GATCTACCAGCTGGTATCAATGCAATAGTTGCTATTATGTGCTATACAGGATATAA 160884 Query 192617 CCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTAT 192676 |||||| |||||| |||| | || || ||||||| || || || |||||| | | | Sbjct 160883 CCAAGAGGACAGTCTTATAATGAACCAATCTTCTATCGACAGGGGTTTATTTAGGAGCGT 160824 Query 192677 AACTTATAATACATATACAGTTGAAGAAACAAAAAATGGAA 192717 |||| ||| |||||| ||| |||| | || | |||| Sbjct 160823 TTTTTATCGTACCTATACAAGTGAGGAAAAACAACAGGGAA 160783 >seq174 Length=97453 Score = 82.4 bits (90), Expect = 1e-10 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 193338 GAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGAT 193397 |||| | | |||||||| || || | ||||| || | |||||||||||| ||||| Sbjct 51167 GAAACTTATATTTTTATGGGACCTATATATTATCAAAAATTAAAACACATGGTTCAGGAT 51108 Query 193398 AAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTGG 193456 ||||| |||||||| | || | | ||| | | || | ||||||||| | || Sbjct 51107 AAAATACATGCTAGGGCTAGAGGACCA-AGACAATTACTAACTAGACAACCAACTGAAGG 51049 Query 193457 TCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCA 193516 | | || ||| ||||| ||| || ||||||||||||||| ||| || | | | | Sbjct 51048 TAGATCAAAAGAAGGAGGATTACGACTTGGAGAAATGGAAAGAGATTGCCTAATTGCATA 50989 Query 193517 TGGTGCTACTCAATTCTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGA 193576 ||||| || | || || ||||||| || | ||| | |||| | | | || | Sbjct 50988 TGGTGTTAGCAATTTACTACTTGAAAGATTGATGTTGAGTAGTGATGTGTGTGATGTATA 50929 Query 193577 TGTTTGCACAGAATGTGGTATGAT 193600 | ||||| ||| ||||| ||||| Sbjct 50928 TATTTGCCAAGACTGTGGCATGAT 50905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628503827466240