Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq176 214 4e-50 seq129 145 1e-29 >seq176 Length=118070 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || || | ||||||||||| ||||| |||||||| || |||||||| ||| Sbjct 109668 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 109609 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||| | ||||||||| ||||| |||| |||||||||||| || || Sbjct 109608 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 109549 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || |||||||| ||||||||||| | || || Sbjct 109548 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 109489 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| ||||| || || || || |||||||||||| Sbjct 109488 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | |||||||| | ||||||||||||||| || |||||||| || Sbjct 109438 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109379 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || || |||| ||||||||| ||||| |||| |||||||||||| || || Sbjct 109378 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||||||||||||||| || || |||||||| ||||| || || | |||||| Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || ||||| || || ||||||||||||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | |||||||| | ||||||||||||||| || |||||||| || Sbjct 109900 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109841 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || || |||| ||||||||| || || |||| |||||| ||||| || || Sbjct 109840 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 109781 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||||||||||||||| || || |||||||| ||||| ||||| | |||||| Sbjct 109780 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 109721 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| |||||||| || || || |||||||||||| Sbjct 109720 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | ||||| || | |||||||| || || || |||||||| | Sbjct 109207 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 109148 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||| | ||| ||||| ||||| || | |||||| ||||| || || Sbjct 109147 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 109088 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||||||| ||||| || || |||||||| ||||||||||| | || || Sbjct 109087 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 109028 Query 82763 TTCCAAAGTTATCGTCTTGCCT 82784 ||||| || ||||| || ||| Sbjct 109027 ATCCAAGGTGATCGTTTTACCT 109006 >seq129 Length=280093 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || |||| |||||| ||||||||||| ||||| |||||| || | || | || |||| Sbjct 42053 ACCAAGTTCAGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCT 41994 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||| ||||| |||| |||||||| || | || ||| |||||||||| ||| Sbjct 41993 AATTGTTTTCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGA 41934 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || |||||||| | ||||||||| ||||| | ||| || || | | || || || Sbjct 41933 ATTTTTGCTTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTT 41874 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||| ||||| |||||| || Sbjct 41873 CCCCTTAATGTTTTTACGAATATTTGCATTTTT 41841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981783372461076