Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq176 91.5 3e-13 >seq176 Length=118070 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696 ||| ||| | || ||||| || |||||||| |||| ||||| | ||||| || Sbjct 109642 CAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTGTTT 109583 Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||| |||| |||||||||| | || | ||| |||||||||||||||| || || Sbjct 109582 TCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGC 109523 Query 81752 TTTTATATTTTCAATCGTAT 81771 |||| ||| |||||||||| Sbjct 109522 CTTTACATTCTCAATCGTAT 109503 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/135 (73%), Gaps = 11/135 (8%) Strand=Plus/Minus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| || |||||||| |||| ||||| | || ||||| Sbjct 109408 AGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCC 109349 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||||||| | || | ||| |||||||||||||||| || || || Sbjct 109348 TGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTT 109289 Query 81755 TATATTTTCAATCGT 81769 || ||| ||||| || Sbjct 109288 TACATTCTCAATGGT 109274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903371856442240