Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq177 286 8e-72 seq187 187 6e-42 seq49 105 2e-17 seq8 102 2e-16 seq158 100 7e-16 seq85 96.9 8e-15 seq87 86.0 1e-11 >seq177 Length=178137 Score = 286 bits (316), Expect = 8e-72 Identities = 618/911 (68%), Gaps = 25/911 (3%) Strand=Plus/Plus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| ||||| | | | || || |||||||| ||||| Sbjct 41942 TAAATAAAGAGATTGATTATACACGTGATTTTAACTACGATTACTTTGGTTTTAAAACGT 42001 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | | |||||| | ||| | ||| | ||||| ||| | || || || || Sbjct 42002 TAGAAAGATCATATTTATTACGTATTAATAATAAAATCATAGAAAGACCACAGCATTTGA 42061 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 || | | || | |||||||| ||| | ||||| | ||||| ||| ||| | Sbjct 42062 TTATGAGAGTATCAATTGGTATACATTTAGATGATCTAGAAAAAGCA-TTA--GAAACCT 42118 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATT---CATGCTACTCCTACCCTATTTAACGCAG 110496 || || | | || | || ||| | || ||||| || || || ||||||| ||| Sbjct 42119 ATCATCTGAT--GTCACAA-AAATATTTTACACATGCAACGCCAACATTATTTAATTCAG 42175 Query 110497 GAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTG 110556 | || || |||| || | ||||| ||| | || | || || | |||||||||| Sbjct 42176 GGACACCAAGACCACAAATGTCATCTTGTTTTTTGCTGTGTATGAAAGCAGATTCTATTG 42235 Query 110557 AAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTG 110616 |||| |||| ||| | | ||| || |||| | || ||||| | || || |||| Sbjct 42236 AAGGAATTTTTGAAACATTAAAACAATGTGCTTTGATAAGTAAAACTGCAGGTGGTATTG 42295 Query 110617 GTATTCACGTTCATGATATTCGCTCAAAAGGAG-CAAATATCGCAACAGCGAAGGGTGCT 110675 || | || || ||||| || | | || | || |||| | | | || ||| | Sbjct 42296 GTGTAGCAGTACAAGATATACG-TGGACAGAATTCATATATAAGAGGAACTAATGGTATT 42354 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| | || |||||||||||||| || ||||| || || | |||||| ||||| Sbjct 42355 TCAAACGGATTAGTACCAATGTTAAGAGTTTTTAACGATACAGCTAGATATGTAGATCAA 42414 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| || ||||| || |||||||| | ||| | ||||| ||||||||||| ||| Sbjct 42415 GGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACCATGGCATTCAGACATA 42474 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| |||| | | |||||||| || |||||| |||||| | |||||| Sbjct 42475 TTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTA 42534 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 |||||||| | ||| || |||||||||| |||||| | ||| | |||||| | ||| Sbjct 42535 TTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAAGAGTTAAGGAAAATAAAAATTGG 42594 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || | |||||||| || | ||| ||| | ||| || || |||| |||||| Sbjct 42595 ACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTGAAACATGGGGTGAAGAATTTGAA 42654 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAA 111029 | | || ||||| |||||| ||||| || || | ||| ||| | ||||||| Sbjct 42655 AAATTATATGAAAAGTATGAAGAAGAA---AATTTAGGAAAAAAAACTGTATTAGCTCAA 42711 Query 111030 GAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 || | ||||| || | || || ||||||| || || || || ||||| Sbjct 42712 GATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAGGTGTACCATACATGTTGTAC 42771 Query 111090 AAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 ||||| |||| |||| ||||||||||||| |||||||| |||||||| | |||||| Sbjct 42772 AAAGATTCAT-GTAATGCTAAATCTAATCAAAAAAATTTAGGTACAATTAAATGTAGTAA 42830 Query 111149 TTTGTGCTGTG 111159 | | ||||||| Sbjct 42831 TCTATGCTGTG 42841 >seq187 Length=410067 Score = 187 bits (206), Expect = 6e-42 Identities = 565/862 (66%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 131438 CCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGGACT 131497 |||||| | ||| |||||||| ||| | ||||| ||| | | || | || ||||| Sbjct 74574 CCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGACA 74633 Query 131498 GTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAATGAA 131557 | |||||| || ||| | | | ||| | | |||| |||||||||| ||||||| Sbjct 74634 GCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAATTAAATGAGAATGAA 74693 Query 131558 AAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAA 131617 || ||||| || | || | ||||| || || | |||||||| || || | ||| Sbjct 74694 AAGCATTTTATTAAACATGTATTAGCATTTTTTGCAGCTAGTGATGGTATAGTATTAGAA 74753 Query 131618 AATCTTGTTATTAATTTCATTCAAGAAA--TTGATATTCCTGAAGTAACATCGTTCTACA 131675 ||| | | | ||| || || |||| | || | ||| | |||| | | || ||| Sbjct 74754 AATTTGGCCAGTAAATT--TTTAAGAGAGGTTCAAATTACAGAAGCTAAAAAATTTTACT 74811 Query 131676 CATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTC 131735 |||||||| || || ||| ||| ||| || | ||| ||| | || || | | Sbjct 74812 CATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGTTTACTTATAGACAATT 74871 Query 131736 TTGTTAAAAATGAAGATGATAAAAATAAATT-ATTTGATGCTGTAAATAAATTTCCTGCA 131794 | | ||| ||||| | || | |||||| |||| ||||| | | || | || ||| Sbjct 74872 ATATAAAAGATGAAAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATATACCAGCA 74930 Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 |||| || |||||| ||||| |||||||| | ||||| | | ||| | Sbjct 74931 GTTAAGAATAAAGCACTTTGGGCAGCAAAATGGAT---AAATGATACAAATTCATTTGCA 74987 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 |||| ||||||| ||| ||||||||||||||| | ||| ||| |||||||||| Sbjct 74988 GAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTGTTTAGTGGTAGTTTCTGTGCT 75047 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 || |||||| |||| || | | | |||||| | || |||| || | || Sbjct 75048 ATTTTTTGGTTTAAAAAACAAAACAAATTACATGGACTTACCTTTAGCAATGAACTAATT 75107 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTT-GCTATATTAATCTATAGAAAATTTGCTGA 132033 |||||||||| ||| ||||| || ||| || | |||| ||||| ||| | | Sbjct 75108 AGTAGAGATGAAGGATTACATACAGATTTTAACTGT-CTAATATATAGTTTATTAGAAAA 75166 Query 132034 TAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 |||||| ||| | | ||||| | || ||| ||||| ||||| | || |||| Sbjct 75167 TAAACTACCAGAAGAAGTTGTTAAAAATATTGTAAAAGAAGCTGTTGAAGTTGA-AAGGT 75225 Query 132094 GTTT-ATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGG 132152 ||| || ||| || | ||||| | || |||||||||||| | | ||| Sbjct 75226 CTTTCATATGTGAATCTCTACCTTGTGACTTAATTGGGATGAATTCAAGATTAATGTCTC 75285 Query 132153 AGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATA 132212 |||| |||||||| || || ||||| ||| | | | || | ||| || |||| | Sbjct 75286 AGTATATTGAATTTGTAGCAGATCGATTATTAGAATGTTTAGGTTGTTCAAAAATTTTTT 75345 Query 132213 ACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCT 132272 | |||| || | || |||||||| | |||||| || |||| ||||| ||||| | Sbjct 75346 TTGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAGGAAAAACAAACTTTT 75405 Query 132273 TCGAAAGTCGTGTATCTGAGTA 132294 | |||| ||||| |||| || Sbjct 75406 TTGAAAAACGTGTTGCTGATTA 75427 >seq49 Length=89902 Score = 105 bits (116), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 58939 ATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACATT 58998 ||||||||| ||||||||||||||||| || | |||||||||||| | ||| ||||||| Sbjct 6873 ATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATT 6814 Query 58999 CCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAATG 59058 |||||||| |||||||| | | | || |||||||| || | | | | || Sbjct 6813 CCATGCACACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATATT 6754 Query 59059 TTTTATTTGGTCAAATCCATTAGTATATTCAGTATTGGCAT-CA-----ATGTATTTATC 59112 ||||| || |||| ||| | ||| |||| ||| ||| || | |||| | | Sbjct 6753 TTTTAGCTGATCAATTCCTT---TATTTTCATAATTATCATACATATTTGTATATTCAGC 6697 Query 59113 TCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 ||| ||| | ||||||||||||||| | ||| || Sbjct 6696 TCCAAAATGTCTCCATTGAAAACCATAAATAGGACC 6661 >seq8 Length=153717 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 72301 AAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGTTC 72360 ||||| |||||||||||| |||| |||||||||||| || | ||||||| |||| Sbjct 115051 AAATTTTCATCTTCAAAATTTTCCCCATATATACTTAAACTTCCACTTCCATTGTAGTTA 115110 Query 72361 ACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAAAG 72409 |||| ||||||||| || | |||||| | |||||||||||||| |||| Sbjct 115111 ACAAAATCACCTCCCTGTATCATAAACTCTTTAATTACTCTATGAAAAG 115159 >seq158 Length=95427 Score = 100 bits (110), Expect = 7e-16 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||| | ||||||||||| ||| ||||| || ||| |||||||| ||| Sbjct 10180 GTACTTTTTAATCGACAACCATCACTTCATCGTATGTCAATTATGTGTCATAAAGCTAAA 10239 Query 305390 GTATT---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCG 305446 || | || | | || |||||||| || | | ||| |||| | ||||||||||| Sbjct 10240 ATAATGAAATATAAA---ACTTTTCGATTTAACGAATGTGTTTGTTCACCTTATAATGCT 10296 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||| |||||||||||| | ||| | || ||| || Sbjct 10297 GATTTTGATGGTGATGAAATGAATCTTCATATTCCACAAACA 10338 >seq85 Length=72756 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| || | |||| | || || ||||||||||| || || || |||||| Sbjct 5716 AGACATATGACAGATGAGGATTATATACTATTTAATAGGCAACCTTCTCTACACAAAATG 5657 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--A 305423 ||| |||| ||||||| || ||||| | | || |||||| ||||| || | Sbjct 5656 AGTATTATGGGACATAAAGCTAAGATATTACCATATTCAACTTTTCGACTAAATTTAGCA 5597 Query 305424 GTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || | | | ||||||||||| |||||||||||||| ||||||||| | ||| || | Sbjct 5596 GTAACATCT---CCTTATAATGCCGATTTTGATGGAGACGAAATGAATCTACATCTAGCA 5540 Query 305483 CAATC 305487 ||||| Sbjct 5539 CAATC 5535 >seq87 Length=94167 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 167685 CATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAAT 167744 |||||||| ||||||||||| | ||| || | || ||| ||||| ||||||||| Sbjct 4157 CATTCATCATAAAAACCATATACAGTTGTTATTTGTCTACTTTCATGATTACCTCTTAAT 4098 Query 167745 AAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAA-AATAATAACAAAATTGTTTCTA- 167802 || ||||||| ||| | || ||| ||||| | || |||||||| Sbjct 4097 AATGTTATGTTTTTTGGAAATAATAATTT-TAACAATAATAAATATTCAAATGTTTCTAC 4039 Query 167803 ATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATT 167851 | ||| || |||||||||||||||||||||||||||||||| | ||| Sbjct 4038 ACTATTATAC-CCTCTATCAACATAATCACCTAAAAATATATAATCATT 3991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186759822160124