Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq176 114 8e-21 >seq176 Length=118070 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| || ||||| || || |||| ||| ||||| || ||||| ||||| | Sbjct 109439 CACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCG 109380 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||| | | | || || ||||||||||| ||||| || || | || ||||| | | Sbjct 109379 ATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTG 109320 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || ||||||| | | |||| || | |||||| |||||| Sbjct 109319 GAATTCCTTCCTTATCTTGAATTTTC-GCCTTTACATTCTCAATGGTGTCTGATGATTCT 109261 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || || || ||||| ||||| |||||||| Sbjct 109260 ACATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 109211 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || |||||||| || || || || |||||| || ||||| ||||| || Sbjct 109668 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 109609 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| | | | || |||||||||||||| ||||| || || | || ||||| | || Sbjct 109608 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 109549 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||||| | | |||| || | || || || || || Sbjct 109548 ATTCCTTCCTTATCTTGAATTTTC-GCCTTTACATTCTCAATCGTATCCGAGGACTCAAC 109490 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || |||||||| ||||| || || |||||||| Sbjct 109489 ATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCAT 109442 Score = 102 bits (112), Expect = 5e-17 Identities = 173/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 33503 ATATACAAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTT 33562 ||||| ||| ||| | ||| ||||| || ||||| || || |||| ||| |||| Sbjct 109919 ATATAAAAAAAAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTT 109860 Query 33563 TTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCA 33622 | || ||||| ||||| || | ||| | | | || || ||||||||||| || || || | Sbjct 109859 TCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTA 109800 Query 33623 AACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC- 33681 | | |||||||| | || | ||||| || || ||||||| | | |||| || Sbjct 109799 ATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTC-GCCTTTACATTCTCA 109741 Query 33682 ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAG 33741 | || || |||||| || || | ||||| || || ||||| || ||||| || || Sbjct 109740 ATAGTATCCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAAT 109681 Query 33742 ATCTGCAT 33749 |||||||| Sbjct 109680 ATCTGCAT 109673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| || ||||| || ||||||| || || ||||| ||||| ||||| Sbjct 109208 CACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCA 109149 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||| | | || |||||||| ||||| ||||| ||||| | |||||||| | | Sbjct 109148 ATAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTG 109089 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCC 33699 | | ||||| || || ||||||| || | ||| ||| || || ||| || Sbjct 109088 GTATTCCTTCCTTATCCTGAATTTTCGCCTTTA-CATTCTCAATCGTATCCGATGACTCA 109030 Query 33700 ACGTCAACCGTGATCGTTTTACCT 33723 || || | ||||||||||||||| Sbjct 109029 ACATCCAAGGTGATCGTTTTACCT 109006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690042817280