Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq176 107 2e-18 >seq176 Length=118070 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || ||||| | ||||| | || || ||| | Sbjct 109673 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 109732 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | ||||| |||||| ||||| || || || || ||||||||| Sbjct 109733 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 109792 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || |||||| | || |||| |||| | ||||| || Sbjct 109793 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 109852 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| || | || ||||| ||| |||| |||||||| Sbjct 109853 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109899 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAA 25260 || ||| ||||||| | || || || | || || |||| || ||| | ||||| || Sbjct 109007 GGTAAAACGATCACCTTGGATGTTGA-GTCATCGGATACGATTGAGAATGTAAAGGCGAA 109065 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| ||||| || || ||||| || |||||||||||| | || | | || || || Sbjct 109066 AATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCA 109125 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | ||||| || || ||||| ||||| ||| | ||||| Sbjct 109126 ATTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTT 109185 Query 25381 AGTGTTAAGATTGAGAGGAGG 25401 ||| ||| |||| |||||||| Sbjct 109186 AGTCTTACGATTAAGAGGAGG 109206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445075016138880