Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq176 89.7 4e-13 >seq176 Length=118070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || || || ||||| ||||| || |||||||| ||| | || |||| | Sbjct 109672 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 109731 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || || |||||| || || ||||| | || ||||| Sbjct 109732 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109791 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAAC--TATGGGCGATTAC 106436 ||||| | || | || || ||||||||||| ||| | ||| ||| | ||||| Sbjct 109792 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCG--GATTAT 109849 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || ||||||||||| |||| ||||| || | ||| ||||||| Sbjct 109850 AACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || || || ||||| || || || |||||||| ||| |||| || || Sbjct 109441 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 109500 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || || |||||| || || ||||| | || ||||| Sbjct 109501 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109560 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAAC--TATGGGCGATTAC 106436 |||||| | || | ||| || |||||||| |||||| | ||| ||| | ||||| Sbjct 109561 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCG--GATTAT 109618 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||| || ||||| ||||| || || ||||| || | ||| |||||||| Sbjct 109619 AACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 109669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402312516582272