Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq176 104 2e-17 >seq176 Length=118070 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 109437 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 109378 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| |||||||| || || | || |||||||| || Sbjct 109377 AATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| || || || | ||||| || ||||| || Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| ||||| | ||| || || || || || || ||||| || || | Sbjct 109669 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 109610 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | ||||| |||||||| || || | || |||||||| | Sbjct 109609 TAATGTTCTTCCA-TCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTG 109551 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| || || || | || || || || || | Sbjct 109550 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAA 109491 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || ||||| || || ||||| ||||| ||||| || |||||| Sbjct 109490 CATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 109899 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 109840 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| ||||| || || || | ||||||||||| || Sbjct 109839 AATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 109781 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| || || || | || || || ||||| || Sbjct 109780 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 109721 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || || || ||||| ||||| || |||||| Sbjct 109720 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505376389899680