Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq94 176 4e-39 seq187 163 2e-35 seq49 150 1e-31 >seq94 Length=33378 Score = 176 bits (194), Expect = 4e-39 Identities = 379/561 (68%), Gaps = 23/561 (4%) Strand=Plus/Plus Query 19319 TTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTG 19378 |||||||| | || |||||||||| |||||| | | ||||| || || ||| | Sbjct 30325 TTAAACAACTAGGTATTAAACATGTTAAGGGACTTATCTTGTATGGTCCTCCAGGTACAG 30384 Query 19379 GAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAA 19435 ||||||||||||| || ||| | | ||||| ||| | ||| | |||| |||| Sbjct 30385 GAAAAACATTAATCGCAAGACAGATAGGTAAAACATTAAATGCAAGAGAACCA---AAAA 30441 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | ||||| || ||||| ||||||||||||||||| || || ||||||||| | ||| Sbjct 30442 TTATTAATGGACCAGAAATATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAA 30501 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGC 19552 ||| ||| || |||||| |||| | |||| || | | |||| |||| || | Sbjct 30502 ATTTATTTAAAGATGCTGAAATAGAATATAAAC--AGAGTGGGGAAAA-TTCTTTATTAC 30558 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTG 19603 | ||||| |||||||| ||| | || || || |||| |||||||| ||| Sbjct 30559 ATATTATTATACTAGACGAAATTGATGCTATATGTAGACAAAGAGGAAATTCCTTTTCCA 30618 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 || | ||||||| |||| | | | || ||||| | || || ||| | || || || | Sbjct 30619 GTAGTACTGGAGTAAATGATAGTATAGTAAATCAGTTACTTTCCAAAATTGATGGAGTGA 30678 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | | |||||||| | |||| || ||||| ||||| | || | || || | Sbjct 30679 ATAGTTTAAATAATATACTTCTTATCGGTATGACAAATAGGATAGATCTTATTGATGAAG 30738 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAATGT 19782 | || ||| |||| || |||| ||| || | || |||| || || | || || | Sbjct 30739 CATTGTTAAGACCTGGAAGGTTTGAATTACATATTGAAA-TATCTCTTCCAAATAAGGAA 30797 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||| | | |||| ||||| ||||||||| || ||| || ||| ||| |||| | Sbjct 30798 GGAAGAATTCAAATATTAAAAATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGT 30857 Query 19843 GACGATGTAGATCTAGAAGAA 19863 ||||| || |||||||| Sbjct 30858 CCAGATGTTAATATAGAAGAA 30878 >seq187 Length=410067 Score = 163 bits (180), Expect = 2e-35 Identities = 571/876 (65%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACA 43771 |||||| ||||| || | ||| | | || ||||||||| | || |||||||||||| Sbjct 74574 CCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGACA 74633 Query 43772 GCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG---CATTAAAACCACAA 43828 || |||||| | ||||| | | || ||| | ||| ||| |||||| | Sbjct 74634 GCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATT---TTGAAAAATTAAATGAGAAT 74690 Query 43829 GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 ||||| |||||||| | | | || || || |||||||| || || || || ||||| Sbjct 74691 GAAAAGCATTTTATTAAACAT--GTATTAGCATTTTTTGCAGCTAGTGATGGTATAGTAT 74748 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||||||||| ||| ||| ||| |||||| | ||||||| | |||| Sbjct 74749 TAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAAGCTAAAAAATTTT 74808 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | |||||||| || | |||||||| ||||| |||| || ||| | || ||||| | Sbjct 74809 ACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGTTTACTTATAGACA 74868 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCT 44065 || || ||||||| | || | | | | || ||| |||| || |||| |||| Sbjct 74869 ATTATATAAAAGATGAAAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATATACCA 74927 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 || |||| |||||||| ||||| |||||||||||| | |||| |||| | Sbjct 74928 GCAGTTAAGAATAAAGCACTTTGGGCAGCAAAATGGATAAATGATACAAATTCATTTGCA 74987 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-GC 44184 ||| || |||| || |||| ||| ||||| || | ||| || | |||| | || Sbjct 74988 GAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTGTTTAGTGG-TAGTTTCTGTGC 75046 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||||| || |||| | | | ||| | || ||| ||||| |||| Sbjct 75047 TATTTTTTGGTTTAAAAAACAAAACAAATTACATGGACTTACCTTTAGCAATGAACTAAT 75106 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 ||| | |||||||| |||||| |||||| || | || | | | || ||| Sbjct 75107 TAGTAGAGATGAAGGATTACATACAGATTTTAACTGTCTAATATATAG---TTTATTAGA 75163 Query 44305 CGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 |||| | || |||| ||| | ||||||| ||| || || | | ||| Sbjct 75164 AAATAAACTACCA--GAAGAAGTTGTTAAAAATATTGTAAAAGAAGCTGTTGAAGTTGAA 75221 Query 44363 CAAGAATT---TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 | | || |||| | | | ||||| | ||||| || |||||| | || Sbjct 75222 -AGGTCTTTCATATGTGA--ATCTCTACCTTGTGACTTAATTGGGATGAATTCAAGATTA 75278 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGAT 44476 ||| || |||||||||| | |||||||| ||| || ||| | ||||| Sbjct 75279 ATGTCTCAGTATATTGAATTTGTAGCAGATCGATTA---TTAGAATGTTTAGGTTGTTCA 75335 Query 44477 AAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 ||| | | ||| | |||| || ||| ||| ||||| ||||| | |||| ||| Sbjct 75336 AAAATTTTTTTTGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAGGAAAA 75395 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 |||||||||||||||||||| |||| || |||||| Sbjct 75396 ACAAACTTTTTTGAAAAACGTGTTGCTGATTATCAG 75431 >seq49 Length=89902 Score = 150 bits (166), Expect = 1e-31 Identities = 283/416 (68%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || | | |||| | |||||| ||||||| ||||| | | ||||||||||||| Sbjct 6640 GATAGAGAGGTAAATGATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCT 6699 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||||| | ||||| ||||||||||| ||||| || | || Sbjct 6700 GAATATACAAATATGTATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATT 6759 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||| || ||| ||| || || || || | || || ||||| || ||||| | Sbjct 6760 ATAAATTTGATAAAAAATGAACCAACAAGTAGAAGAATTATTTTGTGTGCATGGAATGTA 6819 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | ||| | || |||||||| |||||||||||| | ||||| || ||||| ||| | Sbjct 6820 AAGGATCTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTC 6879 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 |||| || | |||||| |||||||| |||| |||| | || || || || || Sbjct 6880 GATGGGAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCC 6939 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || || || || | | |||| || ||| |||| || || || ||| || Sbjct 6940 TTCAATATTGCCTCCTACTCAATTTTCACCTACATGCTTGCTCAAGTATGTAACTTACAA 6999 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||| ||||| | ||| |||||| ||| || || || | ||||||||||| Sbjct 7000 CCTGCAGAATTCATACACGTTTTAGGAAATGCCCACATATATAACAATCACATAGA 7055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439123521420