Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq177 212 5e-50 >seq177 Length=178137 Score = 212 bits (234), Expect = 5e-50 Identities = 820/1264 (65%), Gaps = 52/1264 (4%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 |||||||| ||||| || | || || ||||| |||| ||| | || | || || ||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 ||| |||| |||||||| ||| ||| || | | ||||| || | ||||| ||| Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 43548 Query 130676 CCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCT-GTACAA 130733 || |||| || |||| || |||| ||| || ||| | | |||| | | | | || Sbjct 43547 CCATTGTGAGCAATAAGTT-GTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAA 43489 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 | ||||| | |||||| ||| | | || || ||| || || | ||| || Sbjct 43488 G-TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGT 43430 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 |||| ||||| ||| | |||||||| ||||| ||||| || |||||||||| |||| || Sbjct 43429 AAATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATG 43370 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | || ||||| | || || || | | |||||| | Sbjct 43369 CAGTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTT 43310 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGG---TTTGACATTGTTCCACATATCAAATT 130970 | | ||||| ||||| ||| | || ||||| ||| |||||||||||| | Sbjct 43309 TAAGTTCATTCCAATTCCAGTATTTGTTATCAACTTTGATATT---CCACATATCAAACT 43253 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 | || || |||| || || ||||| ||| | ||||| || | || | | || Sbjct 43252 GAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAG 43193 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 | | || | ||| || || | || || || ||||| |||| |||||||| Sbjct 43192 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 43133 Query 131091 ATTGTTTCGCTTGGT-TGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| ||| |||| | || | ||||||||| || | | | ||||| | ||| || | Sbjct 43132 ATTCTTTTGCTTCATCTGAT-TCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAAT 43074 Query 131150 CCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT- 131208 || |||| |||| || | ||||||||| | || || | | | ||| | Sbjct 43073 CCTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGAT---CTCTCAGCTTCCTTA 43017 Query 131209 --GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACG 131266 |||||| || | ||||| ||||||| |||||| | | | ||||| ||| | Sbjct 43016 ACAGGATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAA-- 42959 Query 131267 CTTTTC----AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTAC 131322 |||| ||||| | |||| ||| |||| || |||||||| | || Sbjct 42958 --TTTCATATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAA 42901 Query 131323 ACATATTGACGCCAGATTACAAACTGCCGTTTCGTC--ATAATCGCAATACTGAACAATT 131380 | || || || | |||||||| || ||| || | || ||| | | ||| Sbjct 42900 AGCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGAT--GTATATTCTATTATT 42843 Query 131381 TCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTC 131440 || ||| | |||||| | || || || || ||||||| |||||| ||||||||| Sbjct 42842 TCACAGCATAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATT- 42784 Query 131441 ACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTA 131499 ||||| || ||||||| |||||| || || ||||| | ||| ||| ||| || Sbjct 42783 ACATGAATCTTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTT--GTAAAATA 42726 Query 131500 TCGAA--AGAGTTTTCGAGC--AGACAATTGATATT--TGTATTGGCCGCGTTTTTCGTA 131553 | || | | | | |||| | ||| || | || | ||| | || ||| || Sbjct 42725 GCAAACCATAAATCTTGAGCTAATACAGTTTTTTTTCCTAAATTTTC----TTCTTCATA 42670 Query 131554 ATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACG---AACTGTCCAAATTGGGACATTC 131610 ||||| || || ||||||| | || || | | ||| |||| |||||||| Sbjct 42669 CTTTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACT---CAAACCTGGACATTC 42613 Query 131611 GCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGG 131670 | |||||||||| | ||| || | | ||||| |||||||| ||||| || Sbjct 42612 ATTTGGACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGG 42553 Query 131671 CACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt- 131729 ||||| | || || || | |||||||||| || |||||| || |||| ||||||| Sbjct 42552 AACCCAAACAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTA-CCATGATTTTTTC 42494 Query 131730 tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGC 131789 |||||| || ||| || || ||||| | |||||| ||||| | ||| ||||| | || | Sbjct 42493 TCAAATCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATC 42434 Query 131790 CTTT 131793 |||| Sbjct 42433 CTTT 42430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424916356754208