Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq177 120 4e-22 >seq177 Length=178137 Score = 120 bits (132), Expect = 4e-22 Identities = 716/1138 (63%), Gaps = 22/1138 (2%) Strand=Plus/Minus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 ||||||| || || || || ||| |||||| ||| || || | ||||||||| Sbjct 43469 TTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAATATTGCTAGTGTATGGT 43410 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 ||||| ||||||| || || || ||||||| || || || || ||||| ||||| | Sbjct 43409 TCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGGTGCTAAA 43350 Query 110789 A--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | || || | | | || || | | || || ||| || || ||| ||| | Sbjct 43349 AGTAAGGAAT--TCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCAATTCC 43292 Query 110847 AGTTGAGCTTGGTTTCACCTTC------CCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 ||| ||| | ||| ||| |||||| ||||||||||| | |||||| | Sbjct 43291 AGTAT---TTGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGCTAG 43235 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCC 110959 | ||| ||| ||| | | |||||| || | || ||| ||||| | || | Sbjct 43234 CTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTCCATAGA-CATT 43176 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 || | | || | ||||| |||||||| || | ||| | || || ||||||||| Sbjct 43175 TCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTCATCT 43116 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || || | | || | | | |||||| || || | ||||| ||||| | || Sbjct 43115 GATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAATTCCT 43056 Query 111080 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 || ||||| |||| | | || || || || || || ||| |||||| ||||||| || Sbjct 43055 ATTGGTCTATGTCTCCTGTTTGATCTCTC-AGCTTCCTTAACAGGATAATAATTTCTTTC 42997 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||| | | || || |||| | |||| ||| ||||| ||||||| | ||||| | ||| Sbjct 42996 AATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATT 42937 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 |||| | ||| | ||| | || | || || ||||| || || ||||| Sbjct 42936 AAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGATGCTAAGTTACAAAC 42877 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| ||||| ||| || |||| ||||| |||| || || ||||| Sbjct 42876 AGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATAGATTACTACATTTAAT 42817 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || || ||||| ||||| ||| || || || | ||| ||||| | |||||| || Sbjct 42816 TGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTGTACAACATGTATGG 42757 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAAT 111438 || || || |||| || | |||||| ||| | ||| ||| |||| | Sbjct 42756 TACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAATCTTGAGCTAATACAGT 42697 Query 111439 GGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498 || | || | || |||||| || | |||||| || |||||| Sbjct 42696 TTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATTTTTCAAATTCTTCACCCCA 42637 Query 111499 CGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 | || | |||||| | | |||||| | | || ||| | | ||||| Sbjct 42636 TGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGTCCAATTTTTATTTTCCTT 42577 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 ||| | ||||| || | ||||||| ||| | | |||| | ||||||| | Sbjct 42576 AACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAA 42517 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGG 111678 ||||| | ||| || || || || || || || || | || || | |||||||| Sbjct 42516 TTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGG 42457 Query 111679 CTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGC 111735 |||| ||| ||||| | ||||| |||| | ||| |||||| |||||| | || Sbjct 42456 TTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGC 42397 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGG-AATAATACCATCTGATTGACCATTTGTCCC 111792 ||| ||||||| || | | |||||| | |||| || | ||| |||||| || || Sbjct 42396 TGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGAAATACCATTAGTTCC 42340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628004649206400