Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq177 163 3e-35 >seq177 Length=178137 Score = 163 bits (180), Expect = 3e-35 Identities = 840/1335 (63%), Gaps = 20/1335 (1%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || |||||| ||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 42340 GGAACTAATGGTATTTCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 42398 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 | |||||| |||||| ||| | |||| ||||| | ||||| ||| |||| || Sbjct 42399 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 42458 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| | || || | || || || || ||| | || || ||| | || || Sbjct 42459 ATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 42518 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 | | ||| | || | ||| | ||| |||||||| | || ||||| |||||| | Sbjct 42519 AAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAAGAGTTAA 42578 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 ||| | | |||||| || | | |||||| | | || ||| | || | Sbjct 42579 GGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTGAAACATG 42638 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 |||||| || |||||| | || |||||| || |||||| | | | || Sbjct 42639 GGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAAGAAGAAAATTTAGGAAAAAAAAC 42698 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || |||| ||| | ||| |||||| | | ||| | || || ||| ||| Sbjct 42699 TGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAGGTGTACC 42758 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 ||||||| | |||||||| | ||||| || ||||||||| ||||| ||| || Sbjct 42759 ATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGTACAAT 42818 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || || ||||| || ||||| | |||| |||| |||||| ||||| Sbjct 42819 TAAATGTAGTAATCTATGCTGTGAAATAATAGAATATACATCACCAGATGAAGTTGCTGT 42878 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 |||||| | ||||| || ||| | || | ||| || |||| | ||| ||| | Sbjct 42879 TTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGACACAGAAAAAAAAGTTTTTAA 42938 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | ||||| | | ||| |||| |||| | | || | ||| || ||| | ||||||| Sbjct 42939 TTTTAAAAAATTATATGAAATTACAAAAATTATTACGAGAAATTTAGACAAAATTATTGA 42998 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 ||||||| ||| || ||| || ||| | ||| || | |||||| | ||||| || Sbjct 42999 AAGAAATTATTATCCTGTTAAGGAAGCTGAGAGATCAAACAGGAGACATAGACCAATAGG 43058 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | ||||| || || | || || ||| || |||| | | | | || || || Sbjct 43059 AATTGGTGTACAAGGATTAGCTGACACATTTATGCTTTTAAGATATCCTTACGAATCAGA 43118 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||||| || ||| | ||| | || ||||| || ||||| | || || | || Sbjct 43119 TGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTACTATGCTGCATTAGAAAT 43178 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 | | || || || | || |||| ||||||| | | ||| ||| ||||||| Sbjct 43179 GTCTATGGAATTAGCTAAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGCTAG 43238 Query 105409 ACAAGGGGTGCTTCAATTTGATATGTGG------GAAGGTGAGACCAAGCTTCACTACGA 105462 ||||| | ||||| |||||||||||| ||| ||| | ||| ||| | Sbjct 43239 CCAAGGTATTCTTCAGTTTGATATGTGGAATATCAAAGTTGATAACAA---ATACTGGAA 43295 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||| | | || || ||| || || | | || || | || | || | || Sbjct 43296 TTGGAATGAACTTAAAGAAAAAATTAAAAAACATGGACTAAGGAATTCCTTACTTTTAGC 43355 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || || || ||||||| || || || ||||||| |||||||| || Sbjct 43356 ACCTATGCCTACTGCATCTACTTCACAAATATTAGGAAACAATGAATCTTTTGAACCATA 43415 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 ||| | || || || |||||| ||| ||||| || | ||||||| || Sbjct 43416 CACTAGCAATATTTACTACAGAAGAGTACTCAGTGGAGAATTCTTCGTTGTCAATCCTCA 43475 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA---AGGATCTCAT 105699 | | | | ||| | || ||| |||||| | || |||| | | || || Sbjct 43476 TTTACTTAAAGACTTATTCGATCGTGGACTCTGGGATGAAGACATGAAACAACAACTTAT 43535 Query 105700 GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTT 105759 | | ||| || |||| |||| || || || | || ||||| | | Sbjct 43536 TGCTCACAATGGTAGT---GTTCAGTATATCAGTGAAATACCTAGAGACCTTAAGGAACT 43592 Query 105760 GTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGG 105819 ||| || ||||||||||||||| ||| | |||| || |||||||| |||||||| Sbjct 43593 ATACAAAACCGTTTGGGAAATCAAGCAAAAGAACATCATCGATATGGCCGCTGATCGTGG 43652 Query 105820 TCGCTTCATTGATCA 105834 | ||||||||||| Sbjct 43653 TGCTTTCATTGATCA 43667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583235398992160