Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq176 100 3e-16 seq129 96.9 4e-15 >seq176 Length=118070 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || || || | || ||||||||| |||| |||| ||| | ||||| ||| Sbjct 109007 GGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAAA 109066 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| ||||| ||||| || || || ||||| | | || ||||| || |||||| Sbjct 109067 ATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCAA 109126 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || |||| | || || || ||||| ||||||||||||| || | ||| || Sbjct 109127 TTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 109186 Query 27613 GTCTTGCG 27620 ||||| || Sbjct 109187 GTCTTACG 109194 >seq129 Length=280093 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | | || || || ||| | ||||||||||| |||| Sbjct 41844 AATGCAAATATTCGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATCAGT 41903 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || || ||||||||||| ||||| | |||||| | ||| | Sbjct 41904 AGATACAATTGAAAATATTAAAGCAAAAATTCAGGATAAGGAAGTAATTCCCCTCGACGA 41963 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||||||||| || || ||| | || || || || || || || Sbjct 41964 ACAAAGATTAATTTTTGCGGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATTACAA 42023 Query 27585 TGTCCAAAAGGAATCCACTCT 27605 | |||| || ||||||||||| Sbjct 42024 TATCCAGAAAGAATCCACTCT 42044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285562982080