Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq176 127 2e-24 seq124 87.8 2e-12 >seq176 Length=118070 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || ||| | || || || || || ||| | || Sbjct 109211 ATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCA 109270 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 109271 GACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 109330 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || |||||||| || || | || | || ||||| ||| Sbjct 109331 CAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 109390 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || || || || ||||| || || || || || Sbjct 109391 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATT 109428 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| | || || ||| | || || | || || || | || Sbjct 109442 ATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCG 109501 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 109502 GATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 109561 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || |||||||||||||| | || | || ||||| ||| Sbjct 109562 CAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAAC 109621 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || ||||| ||| | || || || || || || Sbjct 109622 ATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATT 109659 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| |||| || ||| | || || | || || ||| | || Sbjct 109673 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 109732 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||| || ||||| || ||||||||||| Sbjct 109733 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 109792 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| ||| || |||||||| || || | || | || ||||| ||| Sbjct 109793 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 109852 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || || || || ||||| || || || || || Sbjct 109853 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATT 109890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 ||||||||| || || |||||||| || || ||||| |||||||| ||||| || Sbjct 109044 CGATTGAGAATGTAAAGGCGAAAATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAA 109103 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 | || |||| || || || ||||||||||| | || | | ||||| ||||| | Sbjct 109104 GATTGATATTTGCGGGAAAGCAATTGGAAGATGGCAGAACATTATTGGATTATAACATCC 109163 Query 27172 AAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 ||||||| || ||||||||||| || || || || Sbjct 109164 AAAAGGAATCTACCTTACATTTAGTCTTACGATT 109197 >seq124 Length=98262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 135493 GCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGAT 135552 |||||||| | ||||| ||| || | |||| || | ||||||||||||||||| || Sbjct 95868 GCAGCTTATCCATGAAGGTGTAATTCATGAATTTTTGAGAATGTATTGGGCAAAAAAAAT 95927 Query 135553 ATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTA 135612 || | ||||| | | | | || ||| || | || ||| | ||||| | Sbjct 95928 TCTGAACTGGTCAGAAAATTCCAAAACCGCACTAAAATATGCCATAAAACTAAATGACGA 95987 Query 135613 CTA--CAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGC 135670 | || || || ||| || |||| ||| || || |||||||||||| Sbjct 95988 ATTTGCAATT--GACGGAAAAACATCTAATGCCTATGTTGGAATTATGTGGTCTATCATG 96045 Query 135671 GGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAAC 135730 |||||||| || ||| | ||||| || || | | ||||| || ||| | |||||||| Sbjct 96046 GGTGTACATGACCAAAGTTGGAATGAACGATCAATTTTTGGAAAAATTAGATATATGAAT 96105 Query 135731 TATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGTGAGAAAATAT 135781 ||| |||| |||| ||||| ||| || | || ||||| || ||||||| Sbjct 96106 TATAACGGATGTAAGAGAAATTTTGATATTAACATGTACATGTCAAAATAT 96156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434899459303680