Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq176 134 3e-26 >seq176 Length=118070 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| |||||||||||||||| | || ||||| Sbjct 109426 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCC 109367 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| || | || || ||||| || || | | |||||| || || |||| ||||||||| Sbjct 109366 ATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTT 109307 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || |||||||| || ||| || ||||| ||||| Sbjct 109306 ATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGAT 109247 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| | || || ||||| | ||||||| Sbjct 109246 GGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || |||||||| |||||||||||||||| | || ||||||||||||| || Sbjct 109645 GTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTG 109586 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || ||||| || || | | |||||| || || |||| ||||||||| || || || || Sbjct 109585 TTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTT 109526 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || || || || ||| ||||| || | ||||| |||||||| || Sbjct 109525 CGCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTCTTTCCTGT 109466 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | || || || || | ||||||| Sbjct 109465 TAAGGTTTTCACGAATATCTGCATT 109441 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 || || ||| | ||| | ||| || ||||| |||||||||||||||| | || ||||| Sbjct 109888 TCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCC 109829 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| || | || || |||||||| || | | ||| || || || |||| ||||||||| Sbjct 109828 ATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTT 109769 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || || || || || || || || || ||| || || | ||||| Sbjct 109768 ATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGAT 109709 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || | || || || || | ||||||| Sbjct 109708 GGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || |||||||||||||||||| | || || |||||||||| ||||| || Sbjct 109176 GTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTGCCATCTTCCAATTGCTTTCCC 109117 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | ||| || ||||| || | ||||||||| ||||| || || || Sbjct 109116 GCAAATATCAATCTTTGCTGATCAGGTGGTATTCCTTCCTTATCCTGAATTTTCGCCTTT 109057 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || || || || || || || ||||| || | |||||||| || || Sbjct 109056 ACATTCTCAATCGTATCCGATGACTCAACATCCAAGGTGATCGTTTTACC 109007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159100256903660