Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq176 138 8e-28 >seq176 Length=118070 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||| | || ||||| || ||||| | || ||||| ||| | Sbjct 109441 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 109500 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| |||||| || || ||||| | || || ||||| Sbjct 109501 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109560 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||||||||| || |||||| ||||||| | | | || ||| ||||| || Sbjct 109561 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAA 109620 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || |||||||| || | || ||||| ||| | || |||||||| Sbjct 109621 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 109669 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | |||||||| || ||||| ||||| || || || | Sbjct 109210 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 109269 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | |||| |||||| || || ||||| | || || ||||| Sbjct 109270 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109329 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||||||||| || |||||| | || || | | | || ||| ||||| || Sbjct 109330 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 109389 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| || || ||||| ||||| ||| | || ||||||| Sbjct 109390 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109437 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 || ||||||||||| | || ||||| || |||| || |||| | |||| ||| Sbjct 109007 GGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAAA 109066 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| || || ||||| |||| || ||||| || | || |||||||| || || ||| Sbjct 109067 ATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCAA 109126 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | | || ||| ||||| ||||| ||||| || || || ||||||||| Sbjct 109127 TTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 109186 Query 23818 GTTTTAAGGTTGCGAGGAGG 23837 || ||| | || ||||||| Sbjct 109187 GTCTTACGATTAAGAGGAGG 109206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995247689872