Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq176 138 3e-27 seq29 114 3e-20 seq129 104 6e-17 >seq176 Length=118070 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| | ||| | ||| |||||||| |||| || ||||| | || ||||| ||||| || Sbjct 109420 GACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTC 109361 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || || || || || | || |||||| ||||| ||||| |||||||| ||||| Sbjct 109360 TAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 109301 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || || ||| ||| || ||||||||||| | ||| || || | |||||| ||||| Sbjct 109300 AATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTT 109241 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| ||||| | || | |||||| Sbjct 109240 TCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 >seq29 Length=163906 Score = 114 bits (126), Expect = 3e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || |||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||| Sbjct 100041 GCACCATACACAGGTTGTGCTATGGCAGAATATTTTAGAGATAATGGGAAACATGCTTTA 99982 Query 5091 ATCATCTACGATGATTTAAGTAAACA 5116 || || | ||||||||||||||||| Sbjct 99981 ATAATTTTTGATGATTTAAGTAAACA 99956 >seq129 Length=280093 Score = 104 bits (114), Expect = 6e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||||||||||| |||| ||||||||| |||||| | ||| ||||| || || Sbjct 42044 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 41985 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || | || ||||| |||| | ||||| ||||||| || || || |||||| Sbjct 41984 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAAT-TTTTGC 41926 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | ||| || || ||| | ||| || || | | || || || ||| | || Sbjct 41925 TTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 41866 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||||| ||| | ||||||||| Sbjct 41865 TGTTTTTACGAATATTTGCATTTT 41842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192477966897896