Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq177 484 9e-132 seq187 241 2e-58 >seq177 Length=178137 Score = 484 bits (536), Expect = 9e-132 Identities = 1140/1703 (67%), Gaps = 36/1703 (2%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||||| || | |||||| ||||| | || ||| ||||||| |||||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATT---TG-TATTTTGAATGGA 75633 |||| |||||| | | || || | || ||| | || || ||| |||| Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTC-TCTAGGTATTTCACTGATATACTGAACACT 43549 Query 75634 TCCGCCATCAGATATAA-TTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 || | || |||| |||| | || || || |||| ||| | | | ||| || Sbjct 43548 ACCATTGTGAGCAATAAGTTGTTGT-TTCATGTCTTCATCCCAGAGTCCACGATCGAATA 43490 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 | || |||| | ||||||||| |||| ||||||||| | |||||||| || Sbjct 43489 AGTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGT 43430 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 ||||||| || || |||||||| | ||||||||||||||| || ||||| | ||| || | Sbjct 43429 AAATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATG 43370 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 75872 |||| ||||||||||| | | ||| ||| || || |||||| || | ||||| |||| Sbjct 43369 CAGTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTT 43310 Query 75873 TTAGATATTTCCAATCCCAAAGATCTGATGGTACAAC------ATCCCAGAGATCGTATT 75926 | || | ||||||| ||| || || | |||| || ||| | ||| | | Sbjct 43309 TAAGTTCATTCCAATTCCAGT-ATTTGTTAT--CAACTTTGATATTCCACATATCAAACT 43253 Query 75927 GTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 | ||||| || | |||||| || | ||| | ||| || |||| | ||| || Sbjct 43252 GAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAG 43193 Query 75987 CTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAA 76046 ||| ||| | | ||||| ||| | || || || ||||| ||||| | ||||| | Sbjct 43192 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 43133 Query 76047 GATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106 |||| |||||| || ||||||| |||||| ||||||| || |||| || Sbjct 43132 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 43073 Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166 | || || ||||| || || |||||||||||| | || || | |||||||| || || Sbjct 43072 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 43013 Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCT 76226 | |||||||| | || |||||||| | | |||||| || | ||| | || | Sbjct 43012 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 42953 Query 76227 TTAGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAG 76280 || ||| ||||| ||| |||| | | || ||||| || | ||| |||| Sbjct 42952 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 42893 Query 76281 ATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATA 76340 |||||| |||||||| || || |||| | | ||||| |||||| || ||||| Sbjct 42892 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 42833 Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 |||||||||| || || || || | ||||| ||| || || |||||||| || | Sbjct 42832 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 42773 Query 76401 TATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460 | || | | | || || ||||||||||| || | ||||| ||| | Sbjct 42772 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 42713 Query 76461 CTCTAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACC 76517 || |||| | || || ||| | || || ||| |||||| | | |||||| Sbjct 42712 CTTGAGCT---AATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 42656 Query 76518 GTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577 ||||||||| || ||||| ||| |||||| ||||||||||| |||||||| || | Sbjct 42655 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 42596 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | || ||||||||| | ||||||||| | ||| || | ||| | |||| || Sbjct 42595 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 42536 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||||| | ||| |||||| || || ||| ||| | | |||||| || || | Sbjct 42535 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 42476 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 || || |||||||||||||| | ||||| || | || || ||| || | Sbjct 42475 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 42416 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTA 76816 | ||||||| |||||| || || | ||| ||||||| |||||||| | |||| ||||| Sbjct 42415 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 42357 Query 76817 GATGTACCATTTGTTC--CAGAAATATAACTTCCACATGCACGAATAT-TACTAATAGAT 76873 || ||||||| |||| | | |||| | ||| | |||| |||| | || | | | Sbjct 42356 GAAATACCATTAGTTCCTCTTATATATGAATTC--TGTCCACGTATATCTTGTACT-GCT 42300 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || ||||| ||||| || | |||||| |||| ||||| ||| | || Sbjct 42299 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATT 42240 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 || || ||| ||| | |||| || | |||||| |||||||| | Sbjct 42239 CCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGT 42180 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||| |||||| ||||| || | |||||| || || |||||| || | |||| Sbjct 42179 GTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 42120 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| | || ||||| ||| | ||| || || | | || | ||| | | Sbjct 42119 TAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATC 42060 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 | |||||| |||| ||||| | |||||||| || || || |||||| |||| || Sbjct 42059 AAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAAC 42000 Query 77174 GTTTTAAAACCAAAATAGTTGTA 77196 |||||||||||||| || | ||| Sbjct 41999 GTTTTAAAACCAAAGTAATCGTA 41977 >seq187 Length=410067 Score = 241 bits (266), Expect = 2e-58 Identities = 589/879 (67%), Gaps = 28/879 (3%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||| || || ||| | |||||||| || ||||| || ||||| |||| Sbjct 75446 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 75387 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || ||||| ||| ||| ||||| | || | |||||||| | | || Sbjct 75386 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACC 75327 Query 46446 TAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 ||| |||| ||| | || |||||| || ||||| |||||| ||| | | | Sbjct 75326 TAAACATTCT--AATAA-TCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGA 75270 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGA 46561 |||||| || || | | ||||||| || | || |||| | | ||||| | Sbjct 75269 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAACTTCAA 75211 Query 46562 CAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT-TA 46620 |||| || || || | | || ||| || | || || || ||| || Sbjct 75210 CAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTT-TCTAATAAACTA 75152 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 | |||| ||| |||||| ||| | ||||||||||||||||||| ||| || | Sbjct 75151 TATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTA 75092 Query 46681 AATGTGAGCCCAGGCA-TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCC 46739 || || || ||| | | || || | ||||| | |||||| ||||| |||| || Sbjct 75091 AAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTAAACCAAAAAATAGCACAGAAACTACC 75033 Query 46740 AGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA---ACTGGC 46796 | ||| | ||| ||||| ||| || ||| |||| ||| ||| | | | | | Sbjct 75032 ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGT 74973 Query 46797 ATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 |||||| ||||| || |||||| || || ||||| || || || |||| Sbjct 74972 ATCATTT---ATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTC 74916 Query 46857 TATAGCATTAAAGAGA-----AAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 ||||||| ||| | | | ||| |||| ||| ||||| | ||| | ||||| Sbjct 74915 AATAGCATGAAATAAATTTAAACGTTCTTTT--TCA---TCTTTTATATAATTGTCTATA 74861 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | | |||||| |||||||||| || ||||| | || || |||||| |||||| | Sbjct 74860 AGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTT 74801 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | ||||| ||||| || |||||| | ||||| | |||||| || ||||| Sbjct 74800 TTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATA 74741 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||| | | Sbjct 74740 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTT 74681 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | ||| | | || || | ||| |||||| ||||| ||||||||||||||| ||||| Sbjct 74680 AATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGAT 74621 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 || |||||||||||||| | || ||| | ||| ||||| Sbjct 74620 GCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATAT 74582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903351706880