Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq176 111 4e-19 >seq176 Length=118070 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| ||||| |||||||| ||||| | ||| ||||| ||||| |||| ||| || Sbjct 109408 AGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCC 109349 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 || || || | || || || || | | ||||||||||| ||||||||||| || Sbjct 109348 TGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTT 109289 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| |||| | | ||||||| ||||| || || || || || || ||||| | || Sbjct 109288 TACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTCAAGGT 109229 Query 152087 CTTCACGAAGACCTGCATT 152105 ||||| || | ||||||| Sbjct 109228 TTTCACAAATATCTGCATT 109210 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 |||||| ||||| |||||||| ||||| | ||| ||||| ||||| |||| ||| || Sbjct 109870 AGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCC 109811 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 ||||| || | || ||||| || | | ||||||||||| ||||||||||| || Sbjct 109810 TGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTT 109751 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| |||| | | || || ||||| || | || || || || || || | || Sbjct 109750 TACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGT 109691 Query 152087 CTTCACGAAGACCTGCATT 152105 |||||||| | ||||||| Sbjct 109690 TTTCACGAATATCTGCATT 109672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || ||||||||||| |||||||| ||||| | ||| ||||| |||||||| | | Sbjct 109644 TGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTGT 109585 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | || || || || | | ||||||||||| ||||||||||| Sbjct 109584 TTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTC 109525 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| |||| | | || || ||| || || | || || || || || || Sbjct 109524 GCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTCTTTCCTGTT 109465 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| | ||||||| Sbjct 109464 AAGGTTTTCACGAATATCTGCATT 109441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153769294881764