Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq176 138 2e-27 >seq176 Length=118070 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| |||||||| || || | | || | |||||||||| |||| Sbjct 109413 TGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGT 109354 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || || | |||||| || ||||| || ||||| ||||| || || Sbjct 109353 TTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTC 109294 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || || ||||| || | ||| || ||||| ||||| ||||| |||||| Sbjct 109293 GCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTC 109234 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||| Sbjct 109233 AAGGTTTTCACAAATATCTGCATT 109210 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || |||||| |||||||| || || | | || | |||||||||| |||| Sbjct 109875 TGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGT 109816 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || || || | ||| || || ||||| || ||||| ||||| || || Sbjct 109815 TTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTC 109756 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | || ||||| ||||| | ||| || || | ||||| ||||| || ||| Sbjct 109755 GCCTTTACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTC 109696 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || || || ||||||||||||||| Sbjct 109695 AAGGTTTTCACGAATATCTGCATT 109672 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||| || || | | || | ||||| || | |||||| || ||||| Sbjct 109632 TCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAAT 109573 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || || | |||||| || ||||| || ||||| ||||| || || || ||||| | Sbjct 109572 ATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTC 109513 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || ||||| | || || || | ||||| ||||| || || || || || ||| Sbjct 109512 TCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACG 109453 Query 283089 AATATCTGCATT 283100 |||||||||||| Sbjct 109452 AATATCTGCATT 109441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046692474870536