Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq176 125 2e-23 >seq176 Length=118070 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || ||||| || ||||| ||||| || ||| |||||| Sbjct 109214 CAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCAGAC 109273 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || |||||||| || || || || ||| Sbjct 109274 ACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAACAA 109333 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | || |||||||| || | | ||||||||| || Sbjct 109334 AGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAACATC 109393 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 109394 CAGAAAGAATCTAC 109407 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | |||||||| || |||||| | || || ||| || || Sbjct 109676 CAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCGGAT 109735 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||| || || |||||||| || || || |||||| Sbjct 109736 ACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAGCAA 109795 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | || |||||||| || | | ||||||||| || Sbjct 109796 AGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAACATC 109855 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 109856 CAGAAAGAATCTAC 109869 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | |||||||| || |||||| | || || || ||| || Sbjct 109445 CAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCGGAT 109504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||| || || |||||||| || || || || ||| Sbjct 109505 ACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAACAA 109564 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | ||||||||||| || | | ||||||||| || Sbjct 109565 AGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAACATC 109624 Query 178104 CAAAAAGAATCAACACTGCA 178123 || ||||| || || ||||| Sbjct 109625 CAGAAAGAGTCTACCCTGCA 109644 Score = 100 bits (110), Expect = 7e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| |||||||||||| | || || || || || || || ||||| || || || Sbjct 109006 AGGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAA 109065 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 |||||||| || |||||||| || || || |||||| || | || || || ||||| || Sbjct 109066 AATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCA 109125 Query 178067 GCTCGAAGATGGAAGGAC--TCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 | |||||||| || || | ||| ||||||||| ||||||| ||||| || Sbjct 109126 ATTGGAAGATGGCAGAACATTATTG--GATTATAACATCCAAAAGGAATCTAC 109176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203677466943896