Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq364 122 2e-22 seq363 87.8 4e-12 >seq364 Length=1300438 Score = 122 bits (134), Expect = 2e-22 Identities = 256/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| | | ||||||||||||||| | | ||||||||||||| | ||||| |||| Sbjct 606554 TTTATAATGCATCAACATCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAA 606613 Query 61144 GGACTCCGTTTTATCCTCGTA-GCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATT 61202 || || |||||||| ||| ||| |||| | |||||| |||| || | | ||| Sbjct 606614 ATACCCCATTTTATCC-AGTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATT 606672 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATG-TTTGTATGTAACTCGATTTGTTTCAATCA 61261 | |||||| | || || ||| ||| ||||||| ||| |||| || ||||| Sbjct 606673 ACAATAAATTATAGAGAATCATATAATATGTTTTGTAT-TAATGGTATTTTATTTAATCA 606731 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 || ||||| | ||||| | |||||| || | |||||||| | | ||||||| Sbjct 606732 TGAAAGTCCAAGAAGAGGAGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATTGCAAA 606791 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATC-TAGGAAACATAGACTCTAAAAGAGATT 61380 ||| || | |||| || ||| |||| |||| || ||||| | | ||||||| Sbjct 606792 AATTCAAAAAAAATTAGAAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATT 606850 Query 61381 GGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAG 61440 |||| |||| | |||||| | | ||||||| | |||||||||||| || ||| Sbjct 606851 GGGGCCATGCTAAGGATTATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAG 606910 Query 61441 ATGACTACGTTATT 61454 |||| | |||||| Sbjct 606911 ATGATTTTGTTATT 606924 >seq363 Length=1309936 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 258396 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 258451 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 259586 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 259527 Query 165769 CCCC 165772 ||| Sbjct 259526 TCCC 259523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818958146360