Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq370 168 7e-37 >seq370 Length=3208305 Score = 168 bits (186), Expect = 7e-37 Identities = 578/882 (66%), Gaps = 33/882 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| || | ||| || || ||||| |||||||| | | || || | Sbjct 164187 TTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGT 164246 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAG---TTCCGTA 16027 |||| ||| ||| ||||| | | || ||| || |||||| | || | ||| || Sbjct 164247 CCATCCAATTAAATGGATTTTTGGAATGGAAA-ATTTTAGAGCATCCTAAACATTC--TA 164303 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTCCTAT 16086 | ||||||||| || |||||||||||||||||| |||| ||||| |||| |||||||| Sbjct 164304 A-TAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTAT 164361 Query 16087 -AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 || || | | ||| | || || ||| | ||| | | || |||||||||| Sbjct 164362 TAAATCACATGGTAAG-GATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 164420 Query 16146 TGATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 ||||| || | | | ||| | || ||| | || || | |||| || Sbjct 164421 CGATATTT-TGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAA 164479 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || ||||| |||||| ||||| ||||| | ||| || ||| || || || Sbjct 164480 TTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCG 164539 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 | | ||| | ||||||| ||||| || || ||| ||| || || ||||| Sbjct 164540 TGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATATT 164599 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG---TAGCATCTTTATTACGA 16381 || |||||| ||||| ||| | | || ||| || ||| ||| ||| ||| Sbjct 164600 CCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA------ 164653 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 |||||||| | ||||| ||||| | ||||| | || ||||||| || | | Sbjct 164654 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGA 164713 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 || || || | |||| | ||| | ||||| ||||||| | |||||| || || Sbjct 164714 AATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 164773 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 ||||| || || || |||| ||||| ||||| ||| || | ||| |||| |||| Sbjct 164774 TCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATT 164833 Query 16562 TGTACTTCCACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 || || || | ||||| | | | |||| || || || ||||| |||||||| || Sbjct 164834 TGAACCTCT-CTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGC 164892 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG--AATATGCCAA 16678 |||||| || || | ||||| || |||| ||| || | | | | ||| | ||| Sbjct 164893 AAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT----TTTCATTCAATTTCTCAA 164948 Query 16679 --TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||||||||||| | |||| ||| | |||||||| |||||||| ||| | || | Sbjct 164949 AATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTT 165008 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | || || | | ||||| |||| ||| ||| ||| ||| Sbjct 165009 TCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATA 165050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412021923040