Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq370 421 8e-113 >seq370 Length=3208305 Score = 421 bits (466), Expect = 8e-113 Identities = 1124/1700 (66%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGA 53064 || | |||||| || ||||| |||| || ||||| | | || ||| |||||| Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 53065 TCCACCATCTACCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 |||| | | || | | || || | || || |||| |||||| ||| || | Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1474651 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1474652 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1474711 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1474712 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1474771 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1474772 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1474831 Query 53303 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 53357 |||| ||||||| |||| | | || | | | || Sbjct 1474832 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1474889 Query 53358 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 53416 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1474890 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1474948 Query 53417 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 53476 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1474949 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 53477 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 53534 | |||| ||| | ||| ||| ||||||| |||| | ||||| | ||||||| Sbjct 1475009 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1475066 Query 53535 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 53594 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1475067 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1475126 Query 53595 TAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACAT 53654 ||||||||||| | ||||||||||||| | ||||| ||| | |||| | | Sbjct 1475127 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1475186 Query 53655 CCTTCAGTTTGAGAAAATCAAATTGTCCATCT-----AT-TACAAACATGTTCAATGCAA 53708 | | | || ||||| |||| | | | || |||||| | || || | Sbjct 1475187 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1475246 Query 53709 TAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 53768 ||||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1475247 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1475306 Query 53769 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 53828 | | |||||||| || || || || ||||||| ||||| ||| ||||| | || Sbjct 1475307 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1475366 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 | ||||| || || |||| || ||||| || ||| || || || || ||| | Sbjct 1475367 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1475426 Query 53889 CGACACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 53945 | |||| | | | ||| | || | |||||| ||| ||| ||||| | Sbjct 1475427 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1475483 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 || |||||| || || |||||| | || || |||||||||| |||||||| | Sbjct 1475484 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1475543 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1475544 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1475603 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||||| ||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1475604 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1475663 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC--TCCAGGCCGTTTGTT 54183 | | ||||| |||||||| ||||| | || | | || ||| ||| ||||| Sbjct 1475664 CAAATATATCTGAATGCCATGGTTCAATATAAACAG-CA-AACGATCCCTTACGTTTTCC 1475721 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| Sbjct 1475722 TCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACC 1475781 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTG 54302 ||| ||| |||||||| || |||| || | | | | |||| | || Sbjct 1475782 ATTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGT-CCTCTTATATCTTGTACTG 1475840 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 || ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | | Sbjct 1475841 CTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAA 1475900 Query 54363 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 | || || ||| ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1475901 TACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTT 1475959 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || | Sbjct 1475960 GGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAA 1476019 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 | || || || | |||| ||||| || | ||| || || | | || | |||| Sbjct 1476020 TGATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATT 1476079 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 || | || ||||||||||||| || || || || || | || || ||| ||||| Sbjct 1476080 AATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCC 1476139 Query 54602 AAAGTTTTAAAACCAAAATA 54621 || |||||||| |||||||| Sbjct 1476140 AACGTTTTAAATCCAAAATA 1476159 Score = 176 bits (194), Expect = 5e-39 Identities = 386/573 (67%), Gaps = 4/573 (1%) Strand=Plus/Plus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||| || || |||||||| |||||||| || ||| || | ||| | | | Sbjct 164492 TGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGTGTAATTTATTT 164551 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGC 24268 | || |||| |||||| || | | |||| | ||| || || |||||||| || Sbjct 164552 TGTTTCTTAAACCAAAAAATTG-CACAAAAACTACCACTGAATAATATTCCTTCAACACA 164610 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 24328 ||| |||| || |||||| || | | |||| ||||| ||| ||||| Sbjct 164611 TGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCCATTTTGCTGCCCA 164670 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 || || |||||||| ||| || | |||||||||| ||| | || | |||| Sbjct 164671 TAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATAAATTTAATCTTTC 164730 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 24448 || |||||||| ||| ||||||| || | |||||| |||| |||||||| ||||| Sbjct 164731 TTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTC 164790 Query 24449 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAA 24508 | || |||||||| || || | |||| || || || || || ||| | |||| Sbjct 164791 TACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA 164850 Query 24509 TCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 | | || || |||||||| ||||| || ||||| ||||||||||| || || |||| Sbjct 164851 -CTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACAT 164909 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 | |||||||||| ||| || | | | | ||| | |||| || | ||| |||||| Sbjct 164910 GCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATA 164969 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687 ||| | |||||| |||||||||| || || || || || || || | || ||| | | Sbjct 164970 AATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACAT 165029 Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTAT 24720 || ||||| |||||| | | | ||||| || Sbjct 165030 CAGGATATAATATTGGATATAAAGTAAATCGAT 165062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718839194560