Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29]
372 sequences; 24,055,504 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq360 232 1e-55
seq369 170 3e-37
seq368 154 2e-32
seq361 118 2e-21
seq366 93.3 6e-14
>seq360
Length=1059361
Score = 232 bits (256), Expect = 1e-55
Identities = 518/768 (67%), Gaps = 15/768 (2%)
Strand=Plus/Minus
Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380
|||| ||| | | |||| ||||| | ||| | | | | ||| ||||||| | || |
Sbjct 671092 TTTAATTTAAGTGTTGGGAATGGATAGGGTATTCTGTTAAGTTGAATTTTTAAACTATCA 671033
Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440
|| |||||| ||| | ||||||||| || | | || || || | |||| |||
Sbjct 671032 ATGTGATTATTATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAA 670973
Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500
||| | ||||||||||||| ||| || | | |||| ||||| |||||| |||||
Sbjct 670972 TTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACT 670913
Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560
|||| || | |||| ||||||||||||||| ||||| | |||| || |
Sbjct 670912 CCTAGCCCTAAATCACATGATCTTTGATACATAATACATGATA---ATTTCCCATCGAAA 670856
Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619
|||| ||| || ||| || | ||||||||| |||| |||| | |||| |||| |
Sbjct 670855 ACATAAAACTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTAC 670797
Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679
|||||| || || | || ||||| | ||| | |||||| ||| |||||| ||
Sbjct 670796 ATTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTAT 670737
Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739
|| | |||||||||| | ||||| |||| |||||| || ||||| |||||| |||
Sbjct 670736 ATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATCATACATATTTGTATATTCAGC 670677
Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799
||| ||||| | ||||||||||||||||| || |||||||| ||| ||||| |
Sbjct 670676 ACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAA 670617
Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaat--atggattcct 205857
|| | || | || | ||| | ||||| | ||||| || | ||||
Sbjct 670616 TAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTC-- 670559
Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACA 205917
|||||| | |||| ||| ||| ||| |||||||| | |||||||||| |
Sbjct 670558 TTATTTAACAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATA 670499
Query 205918 ATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATAT 205977
|||||||| |||| | | ||||| || |||||||| || | | | ||| | | ||
Sbjct 670498 ATTCCTCTTAAAAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 670439
Query 205978 TTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTC 206035
|||||| | | || || | || | |||| || |||| || |||| ||||
Sbjct 670438 TTCATAATATATCCGAATTTACTTAAAACACCTACTCCCGTTCGATCACTTTGTTTAT-- 670381
Query 206036 TTCCATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTCA 206082
||||||| || || || || | ||| ||||||||||| ||||||
Sbjct 670380 TTCCATT-CATCATAATATCATAAATAATATTTAAATATTGGTATTCA 670334
>seq369
Length=2804353
Score = 170 bits (188), Expect = 3e-37
Identities = 166/211 (79%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| |||| ||| |||| || ||||| || || | || |||| ||
Sbjct 2577106 AATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATC 2577047
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|||||| ||| ||| |||| || |||||||||||||||||||| || || |||||||
Sbjct 2577046 TGATACGATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAAGGAATTCCTCCTGATC 2576988
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
||||||| | || ||||| |||||||||||||| ||| | | || ||| ||||||||
Sbjct 2576987 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2576928
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|||||||||| ||||| ||||| || |||||
Sbjct 2576927 ATATTCAAAAGGAATCTACTTTACACTTGGT 2576897
>seq368
Length=2153551
Score = 154 bits (170), Expect = 2e-32
Identities = 161/209 (77%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAGA 124623
||| ||||||||||| | || | || || ||| || ||| ||| |||| || |
Sbjct 464397 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCA-A 464455
Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683
||||||||||||||||||| || |||||||| |||||||| | || ||||| |||||||
Sbjct 464456 AAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAAC 464515
Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743
||||||| ||| | |||| ||| |||||| ||||||||||| ||||| || || || |
Sbjct 464516 AATTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACT 464575
Query 124744 TGGTTTTACGTTTACGAGGTGGTATTAAA 124772
| || ||| | ||| |||||||| || ||
Sbjct 464576 TAGTGTTAAGATTAAGAGGTGGTTTTTAA 464604
>seq361
Length=1293923
Score = 118 bits (130), Expect = 2e-21
Identities = 295/448 (66%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822
||||| || | |||| | | |||| ||||| | |||||||| ||||| | | || |
Sbjct 523013 TCAAAATTTCTCTTACAACTGTTATAATTCATAAACCTAATTTTTCCAAACACAGTTCGT 523072
Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882
|| ||||| | |||||| || || |||||| | ||| | ||||||||||| |
Sbjct 523073 TCATTCCAACTTTGATCATGTATTCCCATAATTGAGCTCATGATTGAAACATATCCATGT 523132
Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT-TC 202941
||| | |||| ||| || | | ||||||||| | || ||| |
Sbjct 523133 GGACTTTTTGCATCAATAGAAAAATCATCATTTAATTTCATGGCACATTTTAAAGCTGTT 523192
Query 202942 TTCTGGTGATTT---TGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCC 202998
||| || || || ||| | | |||||||| |||||||||||| | | || |
Sbjct 523193 TTC----GAATTGCCTGACCAGTTCAGAATTTTTTTGCACCAATACATTCTCAGAAATTC 523248
Query 202999 ATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058
||| ||| |||| | |||| | ||| ||| | ||||||||||| ||||| ||
Sbjct 523249 ATGAATTATACCTTCATTAATTAATTGCAGTTGACAACAATTCCATAAATCATCATGTGT 523308
Query 203059 TAATGCA-TTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTT 203117
| ||| |||| |||| | | ||| ||||| || || ||| |||| | ||||
Sbjct 523309 TTTAGCATTTTTGAAGTCG-TCAAAATCATATAAATATTCTCTTTTATCTGAATCGTGTT 523367
Query 203118 CATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTAT 203177
|||| | | | ||||||| | || | ||||| | ||| || ||||||| ||| |
Sbjct 523368 TTTTTAAAGAATCTTTTGCCCAGTCTTTTCCTCCATTAAAATTGTCATAATTTTTATTGT 523427
Query 203178 AATAACAAAAATTATCACATAGTTCTTT 203205
||||||| ||||| ||| ||| |||||
Sbjct 523428 AATAACAGAAATTGTCAGCTAGCTCTTT 523455
>seq366
Length=1537200
Score = 93.3 bits (102), Expect = 6e-14
Identities = 685/1048 (65%), Gaps = 146/1048 (14%)
Strand=Plus/Minus
Query 228171 taataatttaacaaaatcgttaattaaat-taaatattagt---aattgtaatataa--- 228223
||||||||||| |||| || | |||| || |||||| | |||| | |||||
Sbjct 882753 TAATAATTTAATTAAATAAATA-TAAAATATATATATTATTTTAAATTATTATATATATT 882695
Query 228224 taaatgctagttctttaaa---aaatttaattaatttaaaagaattggatatatctaaca 228280
|||||| || || || ||| |||| |||| ||||||||| ||| |||||| ||
Sbjct 882694 TAAATGTTAATTATTAAAATAAAAATATAAT-AATTTAAAATAATAT-ATATATTTAT-- 882639
Query 228281 attataatataaatatttCATCATTACCaaaaacattaattaaattaaatattagttcat 228340
||||| | ||||||| | ||| || |||||||||||| ||| | || ||
Sbjct 882638 -TTATATT-TAAATATAT-----TTATATAA-----TAATTAAATTAATTATAAATTAAT 882591
Query 228341 gtaatataaaaaatactaattttataattaatttagataatttGAAAGAATTAGATATAT 228400
|||| || ||||| || ||||| || || ||| || | ||||| ||
Sbjct 882590 A-AATA-AATAAATAAGAA----ATAATATATATAAATATATTATATAAATTA-----AT 882542
Query 228401 CTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTA 228460
|| |||| ||||||||||| | | |||| ||| |||||| ||||||| ||
Sbjct 882541 -TAAAAAT---AATATAAATATATATTTATTAATTTAATTATTAAT--AATTAAAAAT-- 882490
Query 228461 GGACATGTTATATAAAAAATACTAAT--TTTAT-AATTAATTTAGATA-------ATTTG 228510
|| ||| |||| || || ||| ||||| ||| ||| || ||| ||||
Sbjct 882489 ----AT-TTAAATAATAATTA--AATTATTTATAAATAAATATATATATTAATTTATTTA 882437
Query 228511 AAAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTG 228570
|| ||||| | ||| || |||| |||| ||||| || || | || || || ||
Sbjct 882436 TAATAATTAAAAATA--TATAAATAATAAT-TAAATTATTTATAAATA--AATAT-ATAT 882383
Query 228571 ATTACATTA--AATATTAATTCATGTTATATAAAACACACT--AAT--TTTATAAATGAT 228624
|||| ||| ||| ||||| | |||||||| | | | ||| ||||||||| |
Sbjct 882382 ATTAATTTATTTATAATAATTAAAAATATATAAATAATAATTAAATTATTTATAAATAAA 882323
Query 228625 TTATATAATTTGAAGGAATTGGATATATCTAGAAATTATAATATAAATATTTCATCATTA 228684
| ||| ||| ||| |||||| || |||||| | ||| ||| || | ||
Sbjct 882322 TAATAAAAT------AAAT---ATATATATATAAATTAAATTATTTATA---AATAAATA 882275
Query 228685 CCAAAATCAT-TAATCA--AATTAAATATTAGTGATTGCGATATTAA--AAATACTAAT- 228738
||||| || |||| | || ||||||||| || ||||||| ||| ||||
Sbjct 882274 --AAAATAATATAATAAATAAATAAATATTATATATATATATATTAATTTAATTATAATA 882217
Query 228739 TTTATAAATGATTTAGATAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAAT 228798
||| |||| || || ||||| ||||| || ||| || ||||| | ||||||
Sbjct 882216 ATTAAAAAT-ATATAAATAAT-------AATTAAAT-TATTTATAAATTAATAAATAAAT 882166
Query 228799 ----ATTTCATCATTACCAAAAACATTGACTACATTAAATATTAGTTCAT---GTAAT-A 228850
|||| || | || ||| | | | | || |||||| ||| || || |||| |
Sbjct 882165 ATTAATTTAATAAATAAGAAATATAATTAATA-TTTAAAT-TTATTTAATAACATAATAA 882108
Query 228851 TAA--AAAATACtaattttataattaatttagataatttgaa---agaattagatatatc 228905
||| ||| || ||| | || ||||||||| |||| | || ||||||| || |||
Sbjct 882107 TAATTAAATTAATAAATCAAT-ATTAATTTA-ATAAATAAAATAGAGAATTA-AT-TATT 882052
Query 228906 taaaaat-tttaatataaatatttCATCATTACCAAAATCATTGATTACATTAAATA-TT 228963
||||| | ||||||| | ||||| | |||| |||| || |||| | | || ||
Sbjct 882051 TAAAATTATTTAATAAACATATTATTTAATTATCAAATAATTTTATTAAAAAATTTATTT 881992
Query 228964 AATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATATAATTTGAAAGAATTA 229023
|||| | || ||||| ||| ||| || |||||| |||| ||| || || ||| |
Sbjct 881991 AATTTAATTTTAATAAA-TATAATAAATTAATAAATAATTT---TAAGTTTAA--AATAA 881938
Query 229024 GATATATCTAACAATTATAATATAAATATTTCATCATTACCAAATACATTAATTGAATTA 229083
||| || || |||||||| |||||| || ||| ||| |||||| |||||
Sbjct 881937 AATAAATATA--TATTATAATGTAAATA---AATAATT-----ATATATTAATAAAATTA 881888
Query 229084 AATATTAGTTCGTGTtatataaaaaatactaattttataat-taatttagataatttgaa 229142
| || || | | | || | || ||| |||| ||| || | |||| | |||| |
Sbjct 881887 ATTAATATGCCATTATTTAAATAATATATTAATAATATTATATTATTTTCA-AATT--AT 881831
Query 229143 aaaattagagatatctaaaaGTTCATTA 229170
||||||| | ||| ||||| | ||||
Sbjct 881830 AAAATTATATTTAT-TAAAATTAAATTA 881804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755452487129600
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