Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq360 232 1e-55 seq369 170 3e-37 seq368 154 2e-32 seq361 118 2e-21 seq366 93.3 6e-14 >seq360 Length=1059361 Score = 232 bits (256), Expect = 1e-55 Identities = 518/768 (67%), Gaps = 15/768 (2%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | | |||| ||||| | ||| | | | | ||| ||||||| | || | Sbjct 671092 TTTAATTTAAGTGTTGGGAATGGATAGGGTATTCTGTTAAGTTGAATTTTTAAACTATCA 671033 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || |||||| ||| | ||||||||| || | | || || || | |||| ||| Sbjct 671032 ATGTGATTATTATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAA 670973 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| || | | |||| ||||| |||||| ||||| Sbjct 670972 TTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACT 670913 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||| || | |||| ||||||||||||||| ||||| | |||| || | Sbjct 670912 CCTAGCCCTAAATCACATGATCTTTGATACATAATACATGATA---ATTTCCCATCGAAA 670856 Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| ||| || ||| || | ||||||||| |||| |||| | |||| |||| | Sbjct 670855 ACATAAAACTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTAC 670797 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| || || | || ||||| | ||| | |||||| ||| |||||| || Sbjct 670796 ATTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTAT 670737 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 || | |||||||||| | ||||| |||| |||||| || ||||| |||||| ||| Sbjct 670736 ATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATCATACATATTTGTATATTCAGC 670677 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 ||| ||||| | ||||||||||||||||| || |||||||| ||| ||||| | Sbjct 670676 ACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAA 670617 Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaat--atggattcct 205857 || | || | || | ||| | ||||| | ||||| || | |||| Sbjct 670616 TAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTC-- 670559 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACA 205917 |||||| | |||| ||| ||| ||| |||||||| | |||||||||| | Sbjct 670558 TTATTTAACAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATA 670499 Query 205918 ATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATAT 205977 |||||||| |||| | | ||||| || |||||||| || | | | ||| | | || Sbjct 670498 ATTCCTCTTAAAAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 670439 Query 205978 TTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTC 206035 |||||| | | || || | || | |||| || |||| || |||| |||| Sbjct 670438 TTCATAATATATCCGAATTTACTTAAAACACCTACTCCCGTTCGATCACTTTGTTTAT-- 670381 Query 206036 TTCCATTAGATAAT-ATTTCTGATATACCTTTTAAATATTGATATTCA 206082 ||||||| || || || || | ||| ||||||||||| |||||| Sbjct 670380 TTCCATT-CATCATAATATCATAAATAATATTTAAATATTGGTATTCA 670334 >seq369 Length=2804353 Score = 170 bits (188), Expect = 3e-37 Identities = 166/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || || | || |||| || Sbjct 2577106 AATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATC 2577047 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| || |||||||||||||||||||| || || ||||||| Sbjct 2577046 TGATACGATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAAGGAATTCCTCCTGATC 2576988 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | || ||||| |||||||||||||| ||| | | || ||| |||||||| Sbjct 2576987 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2576928 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||| ||||| ||||| || ||||| Sbjct 2576927 ATATTCAAAAGGAATCTACTTTACACTTGGT 2576897 >seq368 Length=2153551 Score = 154 bits (170), Expect = 2e-32 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAGA 124623 ||| ||||||||||| | || | || || ||| || ||| ||| |||| || | Sbjct 464397 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCA-A 464455 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 ||||||||||||||||||| || |||||||| |||||||| | || ||||| ||||||| Sbjct 464456 AAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAAC 464515 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 ||||||| ||| | |||| ||| |||||| ||||||||||| ||||| || || || | Sbjct 464516 AATTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACT 464575 Query 124744 TGGTTTTACGTTTACGAGGTGGTATTAAA 124772 | || ||| | ||| |||||||| || || Sbjct 464576 TAGTGTTAAGATTAAGAGGTGGTTTTTAA 464604 >seq361 Length=1293923 Score = 118 bits (130), Expect = 2e-21 Identities = 295/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 ||||| || | |||| | | |||| ||||| | |||||||| ||||| | | || | Sbjct 523013 TCAAAATTTCTCTTACAACTGTTATAATTCATAAACCTAATTTTTCCAAACACAGTTCGT 523072 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || ||||| | |||||| || || |||||| | ||| | ||||||||||| | Sbjct 523073 TCATTCCAACTTTGATCATGTATTCCCATAATTGAGCTCATGATTGAAACATATCCATGT 523132 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT-TC 202941 ||| | |||| ||| || | | ||||||||| | || ||| | Sbjct 523133 GGACTTTTTGCATCAATAGAAAAATCATCATTTAATTTCATGGCACATTTTAAAGCTGTT 523192 Query 202942 TTCTGGTGATTT---TGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCC 202998 ||| || || || ||| | | |||||||| |||||||||||| | | || | Sbjct 523193 TTC----GAATTGCCTGACCAGTTCAGAATTTTTTTGCACCAATACATTCTCAGAAATTC 523248 Query 202999 ATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 ||| ||| |||| | |||| | ||| ||| | ||||||||||| ||||| || Sbjct 523249 ATGAATTATACCTTCATTAATTAATTGCAGTTGACAACAATTCCATAAATCATCATGTGT 523308 Query 203059 TAATGCA-TTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTT 203117 | ||| |||| |||| | | ||| ||||| || || ||| |||| | |||| Sbjct 523309 TTTAGCATTTTTGAAGTCG-TCAAAATCATATAAATATTCTCTTTTATCTGAATCGTGTT 523367 Query 203118 CATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTAT 203177 |||| | | | ||||||| | || | ||||| | ||| || ||||||| ||| | Sbjct 523368 TTTTTAAAGAATCTTTTGCCCAGTCTTTTCCTCCATTAAAATTGTCATAATTTTTATTGT 523427 Query 203178 AATAACAAAAATTATCACATAGTTCTTT 203205 ||||||| ||||| ||| ||| ||||| Sbjct 523428 AATAACAGAAATTGTCAGCTAGCTCTTT 523455 >seq366 Length=1537200 Score = 93.3 bits (102), Expect = 6e-14 Identities = 685/1048 (65%), Gaps = 146/1048 (14%) Strand=Plus/Minus Query 228171 taataatttaacaaaatcgttaattaaat-taaatattagt---aattgtaatataa--- 228223 ||||||||||| |||| || | |||| || |||||| | |||| | ||||| Sbjct 882753 TAATAATTTAATTAAATAAATA-TAAAATATATATATTATTTTAAATTATTATATATATT 882695 Query 228224 taaatgctagttctttaaa---aaatttaattaatttaaaagaattggatatatctaaca 228280 |||||| || || || ||| |||| |||| ||||||||| ||| |||||| || Sbjct 882694 TAAATGTTAATTATTAAAATAAAAATATAAT-AATTTAAAATAATAT-ATATATTTAT-- 882639 Query 228281 attataatataaatatttCATCATTACCaaaaacattaattaaattaaatattagttcat 228340 ||||| | ||||||| | ||| || |||||||||||| ||| | || || Sbjct 882638 -TTATATT-TAAATATAT-----TTATATAA-----TAATTAAATTAATTATAAATTAAT 882591 Query 228341 gtaatataaaaaatactaattttataattaatttagataatttGAAAGAATTAGATATAT 228400 |||| || ||||| || ||||| || || ||| || | ||||| || Sbjct 882590 A-AATA-AATAAATAAGAA----ATAATATATATAAATATATTATATAAATTA-----AT 882542 Query 228401 CTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTA 228460 || |||| ||||||||||| | | |||| ||| |||||| ||||||| || Sbjct 882541 -TAAAAAT---AATATAAATATATATTTATTAATTTAATTATTAAT--AATTAAAAAT-- 882490 Query 228461 GGACATGTTATATAAAAAATACTAAT--TTTAT-AATTAATTTAGATA-------ATTTG 228510 || ||| |||| || || ||| ||||| ||| ||| || ||| |||| Sbjct 882489 ----AT-TTAAATAATAATTA--AATTATTTATAAATAAATATATATATTAATTTATTTA 882437 Query 228511 AAAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTG 228570 || ||||| | ||| || |||| |||| ||||| || || | || || || || Sbjct 882436 TAATAATTAAAAATA--TATAAATAATAAT-TAAATTATTTATAAATA--AATAT-ATAT 882383 Query 228571 ATTACATTA--AATATTAATTCATGTTATATAAAACACACT--AAT--TTTATAAATGAT 228624 |||| ||| ||| ||||| | |||||||| | | | ||| ||||||||| | Sbjct 882382 ATTAATTTATTTATAATAATTAAAAATATATAAATAATAATTAAATTATTTATAAATAAA 882323 Query 228625 TTATATAATTTGAAGGAATTGGATATATCTAGAAATTATAATATAAATATTTCATCATTA 228684 | ||| ||| ||| |||||| || |||||| | ||| ||| || | || Sbjct 882322 TAATAAAAT------AAAT---ATATATATATAAATTAAATTATTTATA---AATAAATA 882275 Query 228685 CCAAAATCAT-TAATCA--AATTAAATATTAGTGATTGCGATATTAA--AAATACTAAT- 228738 ||||| || |||| | || ||||||||| || ||||||| ||| |||| Sbjct 882274 --AAAATAATATAATAAATAAATAAATATTATATATATATATATTAATTTAATTATAATA 882217 Query 228739 TTTATAAATGATTTAGATAATTTGAAAGAATTAGATATATCTAACAATTATAATATAAAT 228798 ||| |||| || || ||||| ||||| || ||| || ||||| | |||||| Sbjct 882216 ATTAAAAAT-ATATAAATAAT-------AATTAAAT-TATTTATAAATTAATAAATAAAT 882166 Query 228799 ----ATTTCATCATTACCAAAAACATTGACTACATTAAATATTAGTTCAT---GTAAT-A 228850 |||| || | || ||| | | | | || |||||| ||| || || |||| | Sbjct 882165 ATTAATTTAATAAATAAGAAATATAATTAATA-TTTAAAT-TTATTTAATAACATAATAA 882108 Query 228851 TAA--AAAATACtaattttataattaatttagataatttgaa---agaattagatatatc 228905 ||| ||| || ||| | || ||||||||| |||| | || ||||||| || ||| Sbjct 882107 TAATTAAATTAATAAATCAAT-ATTAATTTA-ATAAATAAAATAGAGAATTA-AT-TATT 882052 Query 228906 taaaaat-tttaatataaatatttCATCATTACCAAAATCATTGATTACATTAAATA-TT 228963 ||||| | ||||||| | ||||| | |||| |||| || |||| | | || || Sbjct 882051 TAAAATTATTTAATAAACATATTATTTAATTATCAAATAATTTTATTAAAAAATTTATTT 881992 Query 228964 AATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATATAATTTGAAAGAATTA 229023 |||| | || ||||| ||| ||| || |||||| |||| ||| || || ||| | Sbjct 881991 AATTTAATTTTAATAAA-TATAATAAATTAATAAATAATTT---TAAGTTTAA--AATAA 881938 Query 229024 GATATATCTAACAATTATAATATAAATATTTCATCATTACCAAATACATTAATTGAATTA 229083 ||| || || |||||||| |||||| || ||| ||| |||||| ||||| Sbjct 881937 AATAAATATA--TATTATAATGTAAATA---AATAATT-----ATATATTAATAAAATTA 881888 Query 229084 AATATTAGTTCGTGTtatataaaaaatactaattttataat-taatttagataatttgaa 229142 | || || | | | || | || ||| |||| ||| || | |||| | |||| | Sbjct 881887 ATTAATATGCCATTATTTAAATAATATATTAATAATATTATATTATTTTCA-AATT--AT 881831 Query 229143 aaaattagagatatctaaaaGTTCATTA 229170 ||||||| | ||| ||||| | |||| Sbjct 881830 AAAATTATATTTAT-TAAAATTAAATTA 881804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452487129600