Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq370 271 7e-68 >seq370 Length=3208305 Score = 271 bits (300), Expect = 7e-68 Identities = 613/904 (68%), Gaps = 27/904 (3%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||| || ||| ||| |||| || | ||| ||| | || ||| ||| || Sbjct 164127 TTTAAAATTCCGTATTCAGACAAAAGACTTGATCCTTTCGTTGTGCCATGACTCCTGATT 164186 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||||| || ||||| || ||||| || ||||||||||||| | |||||| | Sbjct 164187 TTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGT 164246 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAACA 16061 |||| ||| ||| |||||||| ||| | |||| |||||| || ||| || Sbjct 164247 CCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA-- 164304 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTATT 16120 ||||||||| || |||||||||||||| || ||| || || | | |||||||||||| Sbjct 164305 -TAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTATT 164362 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || | | || | | ||| || |||| | |||| | | || ||||| | | Sbjct 164363 AAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACG 164422 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAA----ACATTATACA 16236 |||| | ||| | | | | ||| | |||| || | | || | |||| || Sbjct 164423 ATATTTTGTACCA---TTTGTTCTGGAAG-TTTATTATCTAATAAACTATAAATTAAGCA 164478 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 | |||||| ||| |||||||| || ||||| ||||| || || |||||| | ||| Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538 Query 16297 -TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 || ||| | | |||| |||| |||||| || || ||| |||| || |||| Sbjct 164539 GTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATA 164597 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 | |||||||| ||| ||||| | || ||| | ||| || | | | | | Sbjct 164598 TTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA---A 164654 Query 16416 tccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTA 16474 |||||||| ||||| |||||| | ||| || ||| || || ||||| |||| | Sbjct 164655 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGG-ATATTTTCTATAGCATGA 164713 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 ||||||| | ||||||| |||| ||||||| |||| |||| ||||||||| || Sbjct 164714 AATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTT 164773 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 |||||||||||||| || | ||||| ||||| |||||| | ||||||| | |||| Sbjct 164774 TCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATT 164833 Query 16595 TGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || || || ||||| ||| || || || ||||| ||||| ||||| || ||||| Sbjct 164834 TGAACCTC-TCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGC 164892 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCAGT 16712 |||||| || | | || || ||||||| ||| || || || | || || | | | | Sbjct 164893 AAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCA-AAAT 164951 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | ||||| | |||||||| | |||||| | |||||||||||||| |||| || | Sbjct 164952 CTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCT 165011 Query 16773 TATA 16776 | || Sbjct 165012 TGTA 165015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509849319200