Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq360 224 8e-54 >seq360 Length=1059361 Score = 224 bits (248), Expect = 8e-54 Identities = 502/743 (68%), Gaps = 13/743 (2%) Strand=Plus/Plus Query 20043 ATTTCCC-TTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 ||||||| ||||||||||| || |||||| | ||| || ||||||| || | | Sbjct 670456 ATTTCCCATTATTAACTACAAAGAAATTATTTTTAAGAGGAATTATTGAAGAATTGCTTT 670515 Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG-ATTTGG 20160 ||||||||| |||| ||||||| || | |||| || ||| | |||| || ||| Sbjct 670516 GGTTTATTAGAGGAGAAACAAATGGTAATACG-TTGTTAAATAAGAATGTAAGGATATGG 670574 Query 20161 AGCGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAG 20217 || |||| ||| | |||||||| | | | || |||| | | | ||| Sbjct 670575 GAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAATTATTTCATA---GAGAAGTT 670631 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| || ||| | ||||| ||||||||||||||||| || ||||||||| | Sbjct 670632 AACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAAT 670691 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | |||||| ||||||| ||||||||| ||||| | || ||||||||| Sbjct 670692 ATGTATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATT 670751 Query 20338 -AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 |||| || || | | | ||||||||| |||| || || ||||| | |||||| | Sbjct 670752 AAAAATGATCCTACAAG-TAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGA 670810 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATT 20456 |||||| || ||||| |||||||| |||| || ||||| ||| || |||| Sbjct 670811 CCAAATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATT 670870 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 || ||| ||||||||| |||| |||| | || || || || ||||| |||||||| Sbjct 670871 ATCATGTATTATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGC 670930 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 |||| | | |||| ||||||||||||| || |||| || | | | || Sbjct 670931 TTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCGCAGTT 670990 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA-ACCTTTAAAATTAC 20635 | ||| ||||| | || ||| |||| |||||| || || | || |||||| Sbjct 670991 CATACACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGATAGTTTAAAAATTCA 671050 Query 20636 AGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATA 20695 | |||||| || ||| | | ||||||||| ||| | | || | | ||||| ||| Sbjct 671051 ACTTAACA-GAATACCCTATCCATTCCCAACACTTAAATTAAATCCAGATATTAAAAATA 671109 Query 20696 TTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTC 20755 || | ||||||| | | |||||| || || |||| || ||| | |||| Sbjct 671110 TTGAAGATTTTACAATTTCGGATTTTACAATACAAAATTATGTTCATCATGAAAAAATTT 671169 Query 20756 CAATGGAAATGTCTGTTTAATAT 20778 ||||||| ||| ||| ||||||| Sbjct 671170 CAATGGATATGGCTGCTTAATAT 671192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182190199540