Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq370 444 7e-120 >seq370 Length=3208305 Score = 444 bits (492), Expect = 7e-120 Identities = 1125/1696 (66%), Gaps = 34/1696 (2%) Strand=Plus/Plus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62302 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 62303 TCCACCATCTACCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 |||| | | || | | || || | || || |||| |||||| ||| || | Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1474651 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 ||| || | | | ||| || ||||| || ||||||||| || ||||| | | Sbjct 1474652 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1474711 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1474712 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1474771 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1474772 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1474831 Query 62541 TTTAGATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATT 62595 |||| | ||||||| |||| | | || || || | ||| Sbjct 1474832 TTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAG--CATTCCACATATCAAATT 1474889 Query 62596 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCA 62654 ||| ||||| | || || | || |||| ||| | ||||||||||| | | | Sbjct 1474890 GTAATATACCTTGGCTTGCTGGACT-TCCTTGATAAGATTCATATGGTCCATGTATTGAA 1474948 Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 || | || | | | ||||| ||| | ||||| || |||||||| || | ||||| Sbjct 1474949 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 | |||| ||| | ||| ||||||| |||| | ||||| | || |||||| Sbjct 1475009 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1475068 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1475069 CCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACT 1475128 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | || Sbjct 1475129 GGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCA 1475188 Query 62895 T-TCAGTTTGAGAAAATCAAATCGCCCATCT----AT-TACAAACATGTTCAATGCAACA 62948 | | | ||| ||| | || || | | || |||||| | || || | | Sbjct 1475189 TATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATA 1475248 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||||| |||||| || || || |||| || | | ||||| || || ||| || Sbjct 1475249 GATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACAT 1475308 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | |||||||| || ||||| || ||||||| ||||| ||| ||||| | ||| Sbjct 1475309 AAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCT 1475368 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1475369 TTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAA 1475428 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTATAGAGTATACAAT 63185 || |||| | | | ||| | || | | |||| ||| ||| |||||| ||| Sbjct 1475429 TCTTGAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1475485 Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAAC 63245 ||| || || || |||||| | || | |||||||||| |||||||| || Sbjct 1475486 TTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAAT 1475545 Query 63246 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| | Sbjct 1475546 GTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAA 1475605 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| ||||| || ||| ||| || ||||| |||||| | | ||| | || | Sbjct 1475606 AATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCA 1475665 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||||| |||||||| ||||| | || | || | ||| ||||| ||| Sbjct 1475666 AATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCA 1475725 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| || Sbjct 1475726 CCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTA 1475785 Query 63486 GATATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAG 63544 ||||| ||||||||||| |||| || | | | | |||| | || || Sbjct 1475786 GATATTCCATTGGTACCTCTAATATAAGAATTTTGT-CCTCTTATATCTTGTACTGCTAC 1475844 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || || Sbjct 1475845 ACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACC 1475904 Query 63605 TTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 ||| || ||| | ||| || ||| || ||||| ||||||||| | | | | Sbjct 1475905 TTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGGGG 1475963 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 |||| | |||||| || ||||||| || || ||||| |||| | ||| | || || | Sbjct 1475964 TTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGAT 1476023 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 | || || | |||| ||||| || | ||| || || | | || | |||||| | Sbjct 1476024 ATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATA 1476083 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 || ||||||||||||| |||||| || || || || || || ||| ||||||| | Sbjct 1476084 AATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACG 1476143 Query 63844 TTTTAAAACCAAAATA 63859 ||||||| |||||||| Sbjct 1476144 TTTTAAATCCAAAATA 1476159 Score = 172 bits (190), Expect = 7e-38 Identities = 279/399 (70%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 164648 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATA 164707 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 164708 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 164767 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || |||| |||||||| ||||| | || || ||||| || || | |||| || Sbjct 164768 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 164827 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACT 33991 || || || || ||| | |||| | | || || |||||||| ||||| |||||||| Sbjct 164828 GTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCACT 164886 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||||||||||| || || ||||| |||||||||| ||| || | | | | ||| | Sbjct 164887 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTC 164946 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||| || | ||| |||||| ||| | |||||| |||||||||| || || || || Sbjct 164947 AAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGC 165006 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 || || || | || ||| | ||| ||||| ||||| Sbjct 165007 TTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGG 165045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814671348160