Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq370 679 0.0 seq368 87.8 2e-12 >seq370 Length=3208305 Score = 679 bits (752), Expect = 0.0 Identities = 1228/1772 (69%), Gaps = 53/1772 (3%) Strand=Plus/Plus Query 36906 ATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGC 36965 ||||||| | |||||| | ||| | || | |||| || || ||| ||||| || || Sbjct 1474449 ATTATCTTT-TATATTTTAATT---TTACCT-GATCAATGAAAATACCCCTGTCTGCAGC 1474503 Query 36966 CATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATT 37025 ||| || | |||| ||||| || ||||| || ||||| || | | ||||| | Sbjct 1474504 CATATCAATAATATTCTTTTGCTTAATTTCCCATACAGTTTTGTACAACTCTTTTAAGTC 1474563 Query 37026 ATCTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACAC-AATTGTATTCTTTA 37081 |||||||| || || || ||||||| ||||| || | ||||| | || | Sbjct 1474564 ATCTGGTATTTCACTTATATATTGAATACTTCCATTGTGAGCTATTAATTGCTGT-TTCA 1474622 Query 37082 TGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 |||| | || ||| | | ||| | || ||| | || | || ||||| ||||| Sbjct 1474623 TGTCTTCATCCCATAAACCTCTGTCAAATAAATCTTTTAACAAATGGGGATTAACAACAA 1474682 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 ||| |||||| ||| |||||||| ||| ||||| |||||||||||||||| ||| | Sbjct 1474683 AAAATTCTCCACTTAAAACTCTTCTATAATAAATATTACTAGTATATGGTTCAAAGGATT 1474742 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | || ||||| || ||||||||||| ||||| ||||||| || | | Sbjct 1474743 CATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAGT 1474802 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| || |||||| || ||| | ||||| ||||| ||||||||| | || |||| Sbjct 1474803 TTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCCCAATCCCA-ATATTTGTTA 1474861 Query 37322 GGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||||| | ||||||||| |||||| ||||||| || |||||| | | | Sbjct 1474862 TCAACTTTAGCATTCCACATATCAAATTGTAATATACCTTGGCTTGCTGGACTTCCTTGA 1474921 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTAGTGCGGCA 37434 || | ||||| ||||| | ||| ||| | ||| ||| ||| ||||| || ||| Sbjct 1474922 TAAGATTCATATGGTCCATGTATTGAAGCCAATTC--AAC-AGACATTTCTAAAGCAGCA 1474978 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 ||||| || ||||| || ||| | |||| ||| |||||| | || || ||| | Sbjct 1474979 TAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGA 1475038 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 || | ||||| ||||| ||| || || || |||||||| ||||| || || |||||| Sbjct 1475039 TATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATACCAATAGGCCTATGT 1475098 Query 37555 TTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 | |||||||| | | |||| | |||||||||||||| | ||||| ||||||| | Sbjct 1475099 CTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCTTTCTATAATTTTATCT 1475158 Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT- 37673 | |||| | | ||||| |||||| ||||| | || | ||| | || || Sbjct 1475159 AAATTTCTTGTAATAATTTTGGTAATTTCATATAACTTTTTAAAATTGAATTCTTTTTTT 1475218 Query 37674 -----ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 || |||||||||| || | |||||| | | ||||||||||||||||||||| Sbjct 1475219 TCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCA 1475278 Query 37729 TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788 || ||| ||||| || ||| | ||||| || |||| || |||||||| Sbjct 1475279 GGAGAGGTATATTCGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTT 1475338 Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848 | |||||||||||| ||||||||||||||||||||| ||||| || |||| |||| Sbjct 1475339 TTCTGATTGGATTTTGCATTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCT 1475398 Query 37849 ATTTGAGCCTCG-ATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttt- 37906 ||||| || | | | |||| ||||||| ||||| | || | ||| ||| Sbjct 1475399 ATTTG-GCTTTGTAATATAGCAAACCATAAA--TCTTG--AGCAAGAACTGTTTTTTTTC 1475453 Query 37907 -----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC 37961 ||||||| ||| |||| |||||||||| | ||| || | ||||| || Sbjct 1475454 CCATATTTTCTT--CTTCATATTTAGTATATAATTTTTCAAATTCTTCACCCCAAGTTTC 1475511 Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021 | ||| ||||||||||| ||||||||||| | ||| | || || || || || | Sbjct 1475512 ACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCT 1475571 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 | |||||| | |||||| ||||||| ||| |||||||||| | ||| ||||||| Sbjct 1475572 CTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTC 1475631 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || ||||||||||| || ||| || |||||||| | ||||||||||| || Sbjct 1475632 TTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAAT 1475691 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||||| | | | ||| | ||| | || || |||| | |||||| | || | Sbjct 1475692 ATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATC 1475751 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 |||| | | ||||||||||||||||| |||||||||| | || || |||| ||||| Sbjct 1475752 ATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTGGTACCTCTAATATA 1475811 Query 38262 AGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATTCCACCTGCATGTTTTG 38317 || | | ||| ||||| |||| | ||| || || || |||||| ||||| Sbjct 1475812 AGAATTTTGTCCTCTTATATCTTGTACT--GCTACA--CCAATACCTCCTGCA-GTTTTA 1475866 Query 38318 AT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 | |||||||| |||||||||| ||| ||||| |||||||| ||| || | || ||| Sbjct 1475867 CTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCTGCTTTCATT 1475926 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | || | |||||| ||||||||| || ||| ||||| | ||||| ||||||||| Sbjct 1475927 GATAACAAGAAACAAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGA 1475986 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 | |||||| | || |||| | |||| ||| ||||||||||| | | |||||| Sbjct 1475987 GTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGTTTCTAGAGCTTTATCTATG 1476046 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556 ||| | || ||||| | ||| || ||||||| | |||||| |||||||| || ||| Sbjct 1476047 TCATCTATATGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAATAATT 1476106 Query 38557 TTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 |||||||| | ||| || ||| ||| |||| || ||||| | |||||||||| ||| Sbjct 1476107 TTATTATTAATACGTAA-TAAATAAGATCTTTCCAACGTTTTAAATCCAAAATAATCATA 1476165 Query 38616 TGAATAATCTCTATCGTATGCTATTACATTAT 38647 | |||| ||| || ||||| | |||| Sbjct 1476166 ATTAAAATCCCTAGTATAATCTATTTCTTTAT 1476197 Score = 244 bits (270), Expect = 1e-59 Identities = 554/819 (68%), Gaps = 18/819 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || |||| | || ||||| || || || |||| ||||| || | Sbjct 164186 TTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAG 164245 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||| ||||| | || ||| | ||| || ||||| | |||| Sbjct 164246 TCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAAT 164305 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||||||||| |||||||| | | | ||||||| ||||| | | Sbjct 164306 AATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATTAAA 164365 Query 11519 TC-CACCGGAAT-AGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 || || | || | || |||| || |||| | | || || || | | | Sbjct 164366 TCACATGGTAAGGATTCACATATAAAAGATC--TTTCAACTTCTACAGCTTCTTTAACGA 164423 Query 11577 TCGACGTTATAAC--TTCCT-TAGATGGTGG--ATGTAATAAATGTTTAAACATTAAACA 11631 | | || || | || | | || | | || ||||||| || | ||||| || Sbjct 164424 T--ATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAGCA 164478 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 |||||| |||||| ||||| |||||||| |||| ||||||| |||||| || || Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538 Query 11692 GGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | | | | || | |||| || | |||||| || ||| ||| |||| || |||| Sbjct 164539 GTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATA 164597 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810 |||| || ||| |||| || || | |||||| || | || | | |||| Sbjct 164598 TTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCC 164657 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| ||||| ||||| ||||||||| || |||||||||| | ||||| Sbjct 164658 ATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATA 164717 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 ||| | | ||||| | | |||| | | ||| |||| |||||||||||||| |||||| Sbjct 164718 AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTG 164777 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 ||||||||||||| | |||||||||||| ||| || | || || | || | Sbjct 164778 AATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAA 164837 Query 11991 CATCCACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | | | | ||||| ||| | || ||||| || ||| ||||||||||| | ||||||| Sbjct 164838 CCT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAA 164896 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 ||||||| | ||| |||||||| | ||| || | || | | ||||| || |||| | | Sbjct 164897 AATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTT 164956 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 ||||| | |||||||| | |||||| | ||||||||| Sbjct 164957 AAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 164995 >seq368 Length=2153551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 108148 TATTTATGGGGCCTATATATTATCTTAGACTTAGACATCTAACACAGGATAAGGCTACCG 108207 |||||||||| || || ||||||| | | | | |||| | ||| ||||| | Sbjct 233351 TATTTATGGGACCAATTTATTATCAAAAATTAAAACATATGGTACAAGATAAAATCCATG 233292 Query 108208 TTAGATGTAGAGGGaaaaaaaCAAA-ACTTATTCGTCAAGCTAATGAAGGTAGACGAAAA 108266 |||| |||||| | || |||| ||||| | ||| | | |||||||||| |||| Sbjct 233291 CTAGAGCTAGAGG-ACCAAGACAATTACTTACAAGACAACCAACTGAAGGTAGATCAAAA 233233 Query 108267 GGAGGTGGTATTAAGTTTGGTGAAATGGAAAGAGATTGTCTAATAGCTCATGGTG 108321 | ||| ||| | | || ||||||||||||||||||||| ||||||| |||||| Sbjct 233232 GAAGGAGGTCTCAGATTAGGTGAAATGGAAAGAGATTGTTTAATAGCATATGGTG 233178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522621359680