Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29]
372 sequences; 24,055,504 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq370 679 0.0
seq368 87.8 2e-12
>seq370
Length=3208305
Score = 679 bits (752), Expect = 0.0
Identities = 1228/1772 (69%), Gaps = 53/1772 (3%)
Strand=Plus/Plus
Query 36906 ATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGC 36965
||||||| | |||||| | ||| | || | |||| || || ||| ||||| || ||
Sbjct 1474449 ATTATCTTT-TATATTTTAATT---TTACCT-GATCAATGAAAATACCCCTGTCTGCAGC 1474503
Query 36966 CATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATT 37025
||| || | |||| ||||| || ||||| || ||||| || | | ||||| |
Sbjct 1474504 CATATCAATAATATTCTTTTGCTTAATTTCCCATACAGTTTTGTACAACTCTTTTAAGTC 1474563
Query 37026 ATCTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACAC-AATTGTATTCTTTA 37081
|||||||| || || || ||||||| ||||| || | ||||| | || |
Sbjct 1474564 ATCTGGTATTTCACTTATATATTGAATACTTCCATTGTGAGCTATTAATTGCTGT-TTCA 1474622
Query 37082 TGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141
|||| | || ||| | | ||| | || ||| | || | || ||||| |||||
Sbjct 1474623 TGTCTTCATCCCATAAACCTCTGTCAAATAAATCTTTTAACAAATGGGGATTAACAACAA 1474682
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
||| |||||| ||| |||||||| ||| ||||| |||||||||||||||| ||| |
Sbjct 1474683 AAAATTCTCCACTTAAAACTCTTCTATAATAAATATTACTAGTATATGGTTCAAAGGATT 1474742
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
|||| || | || ||||| || ||||||||||| ||||| ||||||| || | |
Sbjct 1474743 CATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAGT 1474802
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
|||| || |||||| || ||| | ||||| ||||| ||||||||| | || ||||
Sbjct 1474803 TTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCCCAATCCCA-ATATTTGTTA 1474861
Query 37322 GGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377
||||| | ||||||||| |||||| ||||||| || |||||| | | |
Sbjct 1474862 TCAACTTTAGCATTCCACATATCAAATTGTAATATACCTTGGCTTGCTGGACTTCCTTGA 1474921
Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA---TTCTAGTGCGGCA 37434
|| | ||||| ||||| | ||| ||| | ||| ||| ||| ||||| || |||
Sbjct 1474922 TAAGATTCATATGGTCCATGTATTGAAGCCAATTC--AAC-AGACATTTCTAAAGCAGCA 1474978
Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494
||||| || ||||| || ||| | |||| ||| |||||| | || || ||| |
Sbjct 1474979 TAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGA 1475038
Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554
|| | ||||| ||||| ||| || || || |||||||| ||||| || || ||||||
Sbjct 1475039 TATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATACCAATAGGCCTATGT 1475098
Query 37555 TTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614
| |||||||| | | |||| | |||||||||||||| | ||||| ||||||| |
Sbjct 1475099 CTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCTTTCTATAATTTTATCT 1475158
Query 37615 AGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT- 37673
| |||| | | ||||| |||||| ||||| | || | ||| | || ||
Sbjct 1475159 AAATTTCTTGTAATAATTTTGGTAATTTCATATAACTTTTTAAAATTGAATTCTTTTTTT 1475218
Query 37674 -----ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728
|| |||||||||| || | |||||| | | |||||||||||||||||||||
Sbjct 1475219 TCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCA 1475278
Query 37729 TCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTG 37788
|| ||| ||||| || ||| | ||||| || |||| || ||||||||
Sbjct 1475279 GGAGAGGTATATTCGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTT 1475338
Query 37789 CTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCT 37848
| |||||||||||| ||||||||||||||||||||| ||||| || |||| ||||
Sbjct 1475339 TTCTGATTGGATTTTGCATTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCT 1475398
Query 37849 ATTTGAGCCTCG-ATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttt- 37906
||||| || | | | |||| ||||||| ||||| | || | ||| |||
Sbjct 1475399 ATTTG-GCTTTGTAATATAGCAAACCATAAA--TCTTG--AGCAAGAACTGTTTTTTTTC 1475453
Query 37907 -----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC 37961
||||||| ||| |||| |||||||||| | ||| || | ||||| ||
Sbjct 1475454 CCATATTTTCTT--CTTCATATTTAGTATATAATTTTTCAAATTCTTCACCCCAAGTTTC 1475511
Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021
| ||| ||||||||||| ||||||||||| | ||| | || || || || || |
Sbjct 1475512 ACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCT 1475571
Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081
| |||||| | |||||| ||||||| ||| |||||||||| | ||| |||||||
Sbjct 1475572 CTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTC 1475631
Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141
|| || ||||||||||| || ||| || |||||||| | ||||||||||| ||
Sbjct 1475632 TTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAAT 1475691
Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201
||||| | | | ||| | ||| | || || |||| | |||||| | || |
Sbjct 1475692 ATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATC 1475751
Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261
|||| | | ||||||||||||||||| |||||||||| | || || |||| |||||
Sbjct 1475752 ATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTGGTACCTCTAATATA 1475811
Query 38262 AGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATTCCACCTGCATGTTTTG 38317
|| | | ||| ||||| |||| | ||| || || || |||||| |||||
Sbjct 1475812 AGAATTTTGTCCTCTTATATCTTGTACT--GCTACA--CCAATACCTCCTGCA-GTTTTA 1475866
Query 38318 AT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376
| |||||||| |||||||||| ||| ||||| |||||||| ||| || | || |||
Sbjct 1475867 CTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCTGCTTTCATT 1475926
Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436
| || | |||||| ||||||||| || ||| ||||| | ||||| |||||||||
Sbjct 1475927 GATAACAAGAAACAAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGA 1475986
Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496
| |||||| | || |||| | |||| ||| ||||||||||| | | ||||||
Sbjct 1475987 GTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGTTTCTAGAGCTTTATCTATG 1476046
Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556
||| | || ||||| | ||| || ||||||| | |||||| |||||||| || |||
Sbjct 1476047 TCATCTATATGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAATAATT 1476106
Query 38557 TTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615
|||||||| | ||| || ||| ||| |||| || ||||| | |||||||||| |||
Sbjct 1476107 TTATTATTAATACGTAA-TAAATAAGATCTTTCCAACGTTTTAAATCCAAAATAATCATA 1476165
Query 38616 TGAATAATCTCTATCGTATGCTATTACATTAT 38647
| |||| ||| || ||||| | ||||
Sbjct 1476166 ATTAAAATCCCTAGTATAATCTATTTCTTTAT 1476197
Score = 244 bits (270), Expect = 1e-59
Identities = 554/819 (68%), Gaps = 18/819 (2%)
Strand=Plus/Plus
Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398
|||||||| || |||| | || ||||| || || || |||| ||||| || |
Sbjct 164186 TTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAG 164245
Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458
||||| | |||| ||||| | || ||| | ||| || ||||| | ||||
Sbjct 164246 TCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAAT 164305
Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518
|||||||| || || ||||||||||| |||||||| | | | ||||||| ||||| | |
Sbjct 164306 AATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATTAAA 164365
Query 11519 TC-CACCGGAAT-AGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
|| || | || | || |||| || |||| | | || || || | | |
Sbjct 164366 TCACATGGTAAGGATTCACATATAAAAGATC--TTTCAACTTCTACAGCTTCTTTAACGA 164423
Query 11577 TCGACGTTATAAC--TTCCT-TAGATGGTGG--ATGTAATAAATGTTTAAACATTAAACA 11631
| | || || | || | | || | | || ||||||| || | ||||| ||
Sbjct 164424 T--ATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAGCA 164478
Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691
|||||| |||||| ||||| |||||||| |||| ||||||| |||||| || ||
Sbjct 164479 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 164538
Query 11692 GGGCA-TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750
| | | | || | |||| || | |||||| || ||| ||| |||| || ||||
Sbjct 164539 GTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATA 164597
Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCC 11810
|||| || ||| |||| || || | |||||| || | || | | ||||
Sbjct 164598 TTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTAATCC 164657
Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870
||||| ||||| ||||| ||||||||| || |||||||||| | |||||
Sbjct 164658 ATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAAATA 164717
Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930
||| | | ||||| | | |||| | | ||| |||| |||||||||||||| ||||||
Sbjct 164718 AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTCTG 164777
Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990
||||||||||||| | |||||||||||| ||| || | || || | || |
Sbjct 164778 AATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTTGAA 164837
Query 11991 CATCCACATAAAATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049
| | | | ||||| ||| | || ||||| || ||| ||||||||||| | |||||||
Sbjct 164838 CCT-CTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCAAAA 164896
Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109
||||||| | ||| |||||||| | ||| || | || | | ||||| || |||| | |
Sbjct 164897 AATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCTTTT 164956
Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148
||||| | |||||||| | |||||| | |||||||||
Sbjct 164957 AAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 164995
>seq368
Length=2153551
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 108148 TATTTATGGGGCCTATATATTATCTTAGACTTAGACATCTAACACAGGATAAGGCTACCG 108207
|||||||||| || || ||||||| | | | | |||| | ||| ||||| |
Sbjct 233351 TATTTATGGGACCAATTTATTATCAAAAATTAAAACATATGGTACAAGATAAAATCCATG 233292
Query 108208 TTAGATGTAGAGGGaaaaaaaCAAA-ACTTATTCGTCAAGCTAATGAAGGTAGACGAAAA 108266
|||| |||||| | || |||| ||||| | ||| | | |||||||||| ||||
Sbjct 233291 CTAGAGCTAGAGG-ACCAAGACAATTACTTACAAGACAACCAACTGAAGGTAGATCAAAA 233233
Query 108267 GGAGGTGGTATTAAGTTTGGTGAAATGGAAAGAGATTGTCTAATAGCTCATGGTG 108321
| ||| ||| | | || ||||||||||||||||||||| ||||||| ||||||
Sbjct 233232 GAAGGAGGTCTCAGATTAGGTGAAATGGAAAGAGATTGTTTAATAGCATATGGTG 233178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468522621359680
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