Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq370 430 2e-115 >seq370 Length=3208305 Score = 430 bits (476), Expect = 2e-115 Identities = 1125/1700 (66%), Gaps = 42/1700 (2%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 65096 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 |||| | || || | | || || | || || |||| |||||| ||| || | Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1474651 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1474652 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1474711 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1474712 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1474771 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 65333 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1474772 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1474831 Query 65334 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 65388 |||| ||||||| |||| | | || | | | || Sbjct 1474832 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1474889 Query 65389 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1474890 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1474948 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1474949 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 65508 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 65565 | |||| ||| | ||| ||| ||||||| |||| | ||||| | ||||||| Sbjct 1475009 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1475066 Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1475067 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1475126 Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 65685 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | | Sbjct 1475127 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1475186 Query 65686 CCT-TCAGTTTGAGAAAATCAAATCGCTCATCT----AT-TACAAACATGTTCAATGCAA 65739 | | | | ||| ||| | || || | | | || |||||| | || || | Sbjct 1475187 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1475246 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 |||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1475247 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1475306 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | | |||||||| || || || || ||||||| ||||| ||| ||||| | || Sbjct 1475307 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1475366 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1475367 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1475426 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 65976 || |||| | | | ||| | || | |||||| ||| ||| ||||| | Sbjct 1475427 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1475483 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || ||| || || || |||||| | || || |||||||||| |||||||| | Sbjct 1475484 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1475543 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1475544 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1475603 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||||||||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1475604 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1475663 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | ||||| ||||||| ||||| | || | || | ||| ||||| || Sbjct 1475664 CAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTC 1475723 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 | || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||||| Sbjct 1475724 CACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCAT 1475783 Query 66277 TGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTG--CACGAATATTACTAATTG 66333 | ||| | |||||||| || |||| || | ||| | | |||| | || Sbjct 1475784 TAGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATATCTTGTACTG 1475840 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | | Sbjct 1475841 CTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAA 1475900 Query 66394 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 | || || ||| ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1475901 TACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTT 1475959 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || | Sbjct 1475960 GGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAA 1476019 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 | || || || | |||| ||||| || | ||| || || | | || | |||| Sbjct 1476020 TGATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATT 1476079 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 || | || ||||||||||||| || || || || || || || || ||| ||||| Sbjct 1476080 AATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCC 1476139 Query 66633 AAAGTTTTAAAACCAAAATA 66652 || |||||||| |||||||| Sbjct 1476140 AACGTTTTAAATCCAAAATA 1476159 Score = 187 bits (206), Expect = 3e-42 Identities = 592/906 (65%), Gaps = 20/906 (2%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 ||| | ||| ||||| |||||| || || | || | ||| || ||||| || ||||| Sbjct 164167 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 164226 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| | ||| || ||||| ||| |||||||| | || ||||||| Sbjct 164227 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 164286 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 |||| || ||| ||| |||||||| || ||||||||||||||| ||| | Sbjct 164287 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 164343 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 36082 | | ||||||||||||| | | | ||| | || |||| | || |||| ||| Sbjct 164344 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 164401 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139 | || || ||| | | ||| | ||| ||| ||| || || ||| Sbjct 164402 ACTTCTACAGCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 164461 Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||| || | || || || ||||| |||| || || |||||||| |||||| Sbjct 164462 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAAT 164518 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || ||| || | ||| | | | | || |||| |||||| || | | || Sbjct 164519 TCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTG-CACA 164577 Query 36260 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 || | ||| || || |||||||| || ||| |||| || ||| || || | Sbjct 164578 AAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAA 164637 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | | |||| ||||| ||| ||||| || || |||||||| ||| || Sbjct 164638 CGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGAT 164697 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | |||||||||| ||| | || | |||| || |||||||| ||| ||||||| Sbjct 164698 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 164757 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 || | |||||| |||| |||||||| ||||| | || |||||||| || || Sbjct 164758 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTT 164817 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 36557 | |||| || || || || || ||| | |||| | | || || |||||||| |||| Sbjct 164818 TTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTA 164876 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| ||||||||||| || || ||||| |||||||||| ||| || ||| Sbjct 164877 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCAT 164936 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | | ||| | |||| || | ||| |||||| ||| | |||||| |||||||||| | Sbjct 164937 TCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAG 164996 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || || || || || || | || ||| | ||| ||||| |||||| | | | || Sbjct 164997 AAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGTAA 165056 Query 36738 ATCTAT 36743 ||| || Sbjct 165057 ATCGAT 165062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169739496480