Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq370 504 1e-137 >seq370 Length=3208305 Score = 504 bits (558), Expect = 1e-137 Identities = 1142/1699 (67%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 78974 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 78975 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 |||| | || || | | || || | || ||||||| |||||| ||| || | Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1474651 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1474652 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1474711 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||||||||| ||||||||||| | |||||||| ||||| | |||||| | ||| ||| Sbjct 1474712 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1474771 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCT 79212 || |||||||||||||| | ||||| ||||| | ||| | | | ||||||| || Sbjct 1474772 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1474831 Query 79213 TTTAGAGATTCCCAATCCCAA------AGATCAGACGGGACAACATTCCAAAGATCATAT 79266 |||| |||||||||||| |||| || | ||||||| | |||| || Sbjct 1474832 TTTAATTCATCCCAATCCCAATATTTGTTATCA-AC--TTTAGCATTCCACATATCAAAT 1474888 Query 79267 TGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCG 79326 |||| ||||| | || || |||| || | |||||| ||||| | || Sbjct 1474889 TGTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1474948 Query 79327 GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTG 79386 || |||||| | | ||||| || | ||||| || ||||| || || | ||||| Sbjct 1474949 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 79387 AGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | |||| ||| | | | | ||| ||||||| |||| | ||||| | |||||||| Sbjct 1475009 AATTCTTTTGCAGCATCAGAT-TCATATGGATATCTTAATAACATAAATGTATCTGCTAA 1475067 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 |||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1475068 TCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGAC 1475127 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATC 79565 ||||||||||| | ||||||||||||| | ||| || || | |||| | || Sbjct 1475128 TGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTC 1475187 Query 79566 CTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAA----ACATGTT----CAACGCG 79617 | || || ||||| ||| || | | || ||| ||| || || || Sbjct 1475188 ATATAACTTTTTAAAATTGAAT--TCTTTTTTTTCCAAATCTACAAATTTACATAAAGCT 1475245 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 | |||||||| |||||| || || || |||| || | | ||||| || |||||| Sbjct 1475246 ATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAA 1475305 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 || | ||||||||| ||||| || || ||||||| ||||| ||| ||||| | | Sbjct 1475306 CATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAA 1475365 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 || ||||| || || | || || ||||| || || || || || || ||| Sbjct 1475366 TCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1475425 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATAT 79854 | || |||| | | | || | || | |||||| ||| |||| |||||| Sbjct 1475426 AAATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1475482 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 ||| ||| || || || |||||| || ||| || |||||||| | |||||||| Sbjct 1475483 AATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1475542 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 || | ||| | | || || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1475543 AATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1475602 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 ||||| ||||| | ||| || || ||||| |||||| | | ||| | || Sbjct 1475603 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAAT 1475662 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | ||||| |||||||| ||||| | || | || | |||| ||||| | Sbjct 1475663 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCT 1475722 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | |||| Sbjct 1475723 CCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCA 1475782 Query 80155 TTGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||| | |||||||| || |||| || | | | | |||| | || Sbjct 1475783 TTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGT-CCTCTTATATCTTGTACTGC 1475841 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || Sbjct 1475842 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAAT 1475901 Query 80274 GCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 || || || ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1475902 ACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTG 1475960 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 ||||| | |||||| || ||||||| || || ||||| |||| | ||||| || || Sbjct 1475961 GGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAAT 1476020 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 || || || | |||| ||||| || | ||| || || | | || | ||||| Sbjct 1476021 GATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTA 1476080 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 | | || ||||||||||||| || || ||||| || || || |||||| |||||| Sbjct 1476081 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1476140 Query 80513 AAGTTTTAAAACCAAAATA 80531 | |||||||| |||||||| Sbjct 1476141 ACGTTTTAAATCCAAAATA 1476159 Score = 172 bits (190), Expect = 8e-38 Identities = 279/399 (70%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 164648 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATA 164707 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 164708 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 164767 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || |||| |||||||| ||||| | || || ||||| || || | |||| || Sbjct 164768 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 164827 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTC-AGCTAAATTTTCATTCACTATTCCGTCACT 50369 || || || || ||| | |||| | | | ||| |||||||| ||||| || ||||| Sbjct 164828 GTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCACT 164886 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 ||||||||||| || || ||||| |||||||||||||| || || | | ||| | Sbjct 164887 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTC 164946 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 |||| || | ||| |||||| ||| | |||||| |||||||||| || || || || Sbjct 164947 AAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGC 165006 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 || || || | || ||| | ||| ||||| ||||| Sbjct 165007 TTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGG 165045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265460050080