Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29]
372 sequences; 24,055,504 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq370 228 8e-55
>seq370
Length=3208305
Score = 228 bits (252), Expect = 8e-55
Identities = 592/886 (67%), Gaps = 45/886 (5%)
Strand=Plus/Plus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
||||||||| || |||||||| ||||| ||||| ||||| |||| ||||| ||
Sbjct 164185 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 164244
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAA 13696
||||| ||| |||||||||| | || || | |||| || |||| ||||||
Sbjct 164245 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 164304
Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 13755
|| |||||||||||| ||| || |||||||||||||| || || | ||||||| ||||
Sbjct 164305 TA---ATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTA 164360
Query 13756 TTAGTTTTACA------GGAATTATATTGGTTAAAAATTCTTT----TTCTATAGACACA 13805
||| | ||| ||| | | || ||||| ||||| ||||| ||
Sbjct 164361 TTAAATC-ACATGGTAAGGATTCACATA---TAAAAGATCTTTCAACTTCTA------CA 164410
Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCAT-TAGAAGGAGGATATTTTAGATGTTTAAA 13864
|| ||||| | ||| || | || | | | |||| ||| | | | | | |
Sbjct 164411 GCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATA 164469
Query 13865 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 13924
|||||| || |||||| ||| | || ||||||||||| || | ||| || |||
Sbjct 164470 AATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAA 164529
Query 13925 TGTTAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983
||| || || || || || | |||| || |||||||| |||||| ||| ||
Sbjct 164530 TGTCAAACCGTGTAATTTATTTT-GTTTCTTAAACCAAAAAATTGCACAAAAACTACCAC 164588
Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043
|| |||||||| ||||| ||| || | | || ||| ||||||| ||
Sbjct 164589 TGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAA-----TT 164643
Query 14044 TGTTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101
|| || ||||||||| |||||| | ||| ||||| | | || ||||
Sbjct 164644 AGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTC 164703
Query 14102 AATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159
||||||| |||||||| | || |||| ||| | || ||| || ||||||| | |
Sbjct 164704 TATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAAT 164761
Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219
|| ||||| |||| || || || ||||| | |||||| ||||| |||||| | ||
Sbjct 164762 AAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTA 164821
Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCG-GCCAAATTTTCATTAACTATACC 14278
||||||| ||| || || ||||| ||| | ||||||||||| ||||||||
Sbjct 164822 GCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACC 164880
Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338
|||||| |||||||||||||| || | | || ||||| | || ||| | | || |
Sbjct 164881 ATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAA 164940
Query 14339 TTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398
||| | |||| |||||| |||| | ||| | ||| || ||||||||||| |||
Sbjct 164941 TTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGC 165000
Query 14399 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444
||||||| || || | |||| | || ||||||||| |||
Sbjct 165001 TTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGA 165046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479725769264800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |