Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq368 98.7 6e-16 seq369 87.8 1e-12 >seq368 Length=2153551 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/205 (72%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||||| || || ||||| || || ||||| ||||||||||| || Sbjct 464598 ACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATCTGA 464539 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || ||||| |||||| ||||||||| | ||| ||||| | || Sbjct 464538 TAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGG 464479 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTT 33317 || |||||||| || || | ||| || || | | ||| ||||| | ||| | Sbjct 464478 AATTCCTTCTTTATCTTGAATTTTTGCC---TTAACATTCTCAATGGTGTCAGATGGCTC 464422 Query 33318 GAACGTCCAGAGTTATCGTTTTTCC 33342 | ||||| || ||||| |||||||| Sbjct 464421 G-ACGTCAAGGGTTATAGTTTTTCC 464398 >seq369 Length=2804353 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || || || || || ||||| ||||| ||||| || || | | || || Sbjct 2576897 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2576956 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| ||||||||| | ||| || || | || || |||||||| || | Sbjct 2576957 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 2577016 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| | || | | |||||| || || | ||| || || || || ||| Sbjct 2577017 ATTTTTGCCT---TAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTT 2577073 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || | |||||||| ||||||||||| || Sbjct 2577074 TTTCCAGTTAATGTTTTTACAAAAATTTGCATTTT 2577108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776154742056