Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq370 253 2e-62 seq358 82.4 7e-11 >seq370 Length=3208305 Score = 253 bits (280), Expect = 2e-62 Identities = 572/844 (68%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || |||||||| |||||||||||||||||||||| | ||||| Sbjct 164185 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 164244 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA---CACCCTAATTCTAG 12975 ||||| ||| || |||||||| ||| | | | ||||| || ||||| | Sbjct 164245 GTCCATCCAATTAAATGGATTTTTGGAA---TGGAAAATTTTAGAGCATCCTAAACATTC 164301 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTA 13034 ||| ||||| ||||||||||| ||||| || || ||| || || | | |||||||||| Sbjct 164302 TAATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTA 164360 Query 13035 TTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATA 13093 |||| | ||| || | | ||| || ||| | |||| | || || ||||| || Sbjct 164361 TTAAATC-ACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTA 164419 Query 13094 ACTATGTCTCTTATTAC--GTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATCATA 13150 || || | | || | ||||| || | | || | ||| | || | || | Sbjct 164420 ACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAG 164476 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||| || ||||||||||||||||| |||| || || |||||| | | Sbjct 164477 CAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAA 164536 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || | | | |||| |||| |||||| || ||| ||| ||| || ||| Sbjct 164537 CCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAAT 164596 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 ||||||||||| |||| || | | |||||| || ||| | || | | | | Sbjct 164597 ATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA--- 164653 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTT 13389 ||||| ||| ||||| |||||| | ||| ||| ||| ||||||||||| || | Sbjct 164654 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGG-ATATTTTCTATAGCATG 164712 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||||||| | |||| || ||| ||||||| |||| || ||||| ||||| | Sbjct 164713 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGT 164772 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 |||||||||||||||||| | |||||||| || |||||| | |||| || | || Sbjct 164773 TTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTAT 164832 Query 13510 CTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||| || ||||| ||| || || || ||||| ||||| || ||||| || | Sbjct 164833 TTGAACCTC-TCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTG 164891 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 ||||||| || | | ||||| ||||| | ||| || ||||| ||| || ||| Sbjct 164892 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAAT 164951 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 || ||||| | |||||||| | || || | |||||||||||||| |||| |||| Sbjct 164952 CTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCT 165011 Query 13689 TATA 13692 | || Sbjct 165012 TGTA 165015 >seq358 Length=791303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104790 AAGTCAAAGGTTTTCATGGGACCTATATACTATTTAAGGTTAAGACATTTAACTCAAGAC 104849 ||||| || | || || ||||| | ||| ||| ||| |||| |||| | | |||| Sbjct 579363 AAGTCCAAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGAT 579422 Query 104850 AAAGCTACA-GTAAGGTGTAGAGGaaaaaaaaCAAAATTAATAAGACAAGCTAACGAAGG 104908 ||| |||| | ||| |||||||| | ||| | | | ||||||| | | ||||| Sbjct 579423 AAAA-TACATGCAAGAAGTAGAGGACCATTAACTATGATTACAAGACAACCAACAGAAGG 579481 Query 104909 ACGAAGACGAggggggggAATAAAGTTTGGAGAGATGGAAAGAGACTGTTTAATAGCACA 104968 | || | ||| || || ||| |||||||| ||||||||||| ||| | ||| |||| Sbjct 579482 AAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACA 579541 Query 104969 TGGTGCTGCAAA 104980 ||| ||||||| Sbjct 579542 TGGATCTGCAAA 579553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980446033544