Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq369 192 1e-43 seq368 163 7e-35 seq370 129 1e-24 >seq369 Length=2804353 Score = 192 bits (212), Expect = 1e-43 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| |||||||| || ||||||||||| || |||| || || || ||||||| |||| Sbjct 2576903 TGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGT 2576962 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| |||| || |||||||||||||| |||||||||||||| ||||| ||| Sbjct 2576963 TTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 2577022 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| || || || || || ||||| || || ||||| Sbjct 2577023 GCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTT 2577082 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | |||||||||||| || |||||||| Sbjct 2577083 AATGTTTTTACAAAAATTTGCATTTT 2577108 >seq368 Length=2153551 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| |||||||||||||| || |||||||| || || ||| Sbjct 464597 CCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATCTGAT 464538 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || ||||||| ||||||||||||||| |||| || ||||| ||||| || Sbjct 464537 AAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGA 464478 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| ||||| ||||| || ||||| || | ||| || || || || Sbjct 464477 ATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACG 464418 Query 104513 TCTAGTGTAATAGTCTTACC 104532 || || || ||||| || || Sbjct 464417 TCAAGGGTTATAGTTTTTCC 464398 >seq370 Length=3208305 Score = 129 bits (142), Expect = 1e-24 Identities = 382/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 268697 GATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCC 268756 ||| ||||| ||| ||||||| || |||| | ||| | ||||| | || Sbjct 165063 GATCGATTTACTTTATATCCAATATTATATCCTGATGTTTGGGATTTTTACAAGAAAGCT 165004 Query 268757 GTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAA 268815 | |||||||||||||| | ||||||| | ||| | ||| ||| |||| ||||| || Sbjct 165003 GAAGCTTCTTTTTGGACAGCAGAAGAAATTGATTTATCTAGTGATTTAAAAGATTTTGAG 164944 Query 268816 AAATTTAAA-ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 ||||| || | | ||||| | |||||| || | | || |||||||||| | Sbjct 164943 AAATTGAATGAAAATGAGAAACAT--TTTATAAAGCATGTGTTAGCATTTTTTGCAGCAA 164886 Query 268875 GTGATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCT 268933 |||||||||| || |||||| | | ||| ||||| | |||||| || || | Sbjct 164885 GTGATGGTATAGTATTAGAAAATTTGGCTAGT-AAGTTTTTAAGAGAGGTTCAAATAACG 164827 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 ||||| | | ||||| || || |||||| ||||||||||||||||||| | || Sbjct 164826 GAAGCTAAAAAATTTTATTCCTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATAT 164767 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 ||| ||||||| |||| |||||| | ||| | || |||| || ||||| | || Sbjct 164766 AGTTTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAATTTATTTCATGCT 164707 Query 269054 ATGAGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA 269112 || || ||| ||| || | ||| ||| | |||||| |||||||| || || Sbjct 164706 ATAGAAAATAT-CCCTGCCGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGA 164648 Query 269113 TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || | | | ||||| | |||||| ||| ||| ||||| ||||| || Sbjct 164647 TACTAATTCGTTTGCTGAAAGAATTGTTGCTAATGCATGTGTTGAAGGAATATTATTCAG 164588 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA--AAGAGGCCTTATGCCAGGATTAACT 269230 || |||| || || |||||||| ||||| || | ||| | || || || Sbjct 164587 TGGTAGTTTTTGTGCAATTTTTTGGTTTAAGAAACAAAATAAATTA--CACGGTTTGACA 164530 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || ||| ||||| || || || || ||||| ||||| Sbjct 164529 TTTAGTAATGAATTAATCAGTAGAGATGAAGGATTACA 164492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392912147376