Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq360 172 7e-38 seq359 165 1e-35 >seq360 Length=1059361 Score = 172 bits (190), Expect = 7e-38 Identities = 402/592 (68%), Gaps = 21/592 (4%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTT 6898 ||||| ||| |||| ||||| || || || | | |||| || || | ||| ||| Sbjct 671021 ATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAATTA-CAGACTT 670963 Query 6899 GAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCA 6958 | ||||| | || || || | | ||||||||| | |||||||||||| |||| || | Sbjct 670962 GTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGCCCTA 670903 Query 6959 TATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGA 7017 ||| |||||||||||| ||| ||| ||||| | || | | ||||||| ||| Sbjct 670902 AATCACATGATCTTTGATA-CATAATACATGATAATTTCCCATCGAAAACATAAAACTGA 670844 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTC 7077 || || | |||||| |||||||| | || || | ||| | |||||| ||| | Sbjct 670843 CATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACAC 670784 Query 7078 ATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTG 7136 | | ||| | |||| | |||| ||||||||| || || || ||| |||||| Sbjct 670783 AAAAGAATTCTTCTACTTGTAGGATCA-TTTTTAATTAAATTTATTATATTTTTTAATTG 670725 Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAAAATGTC 7195 ||| | || | | |||||||||| || ||| |||| |||| | ||| || ||||||| Sbjct 670724 ATCCACTCCTTTATTTTCATAATTATCAT-ACATATTTGTATATTCAGCACCGAAATGTC 670666 Query 7196 TCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAA 7253 |||||||||| ||||||||||| |||||||| |||| | ||| || | | ||| Sbjct 670665 TCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAATAATTTTCTAT 670606 Query 7254 TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGA 7310 | || ||| | ||| | | |||| ||| ||||| || |||| || ||| | Sbjct 670605 T--ATCTAA---AAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTCTTATTTAA 670551 Query 7311 TAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACG 7370 || | | |||||| |||| ||| ||||| | | |||||| | ||||| | Sbjct 670550 CAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATAATTCCTCT 670491 Query 7371 CCAAAACATTCTTTTTGTAGTGAATAAAGGGA---ATGTACTTAAATCATAT 7419 |||| | | | |||||||| ||||| |||| || |||||||||| || Sbjct 670490 TAAAAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 670439 >seq359 Length=958772 Score = 165 bits (182), Expect = 1e-35 Identities = 472/716 (66%), Gaps = 31/716 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| || ||||||||| | || |||| | | ||||| |||||| || || Sbjct 112469 AATTTCAACTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTCAAGACCATCTTT 112410 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | |||||| ||| | ||| | | || |||||| ||||||| | |||| Sbjct 112409 AGAAGAACGTTTGCTAGTAGGATATATCCAAATTATATTATAAAACAATTAGG-TATAAA 112351 Query 164512 -CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| |||| || || ||||| |||| ||||||||| |||||||| ||||| ||| | Sbjct 112350 GCATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACCTTAATAGCTAG 112291 Query 164571 ATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 | || | ||| || ||| || || ||| ||||| |||||||||| ||| | Sbjct 112290 ACAAATAGGG-AAGACATTGAATGCACGAGAACCG--AAAATAATTAATGGTCCAGAAAT 112234 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || |||||||| || | ||||||| ||| || | || || ||| | || || || Sbjct 112233 ATTAAATAAATATGTTGGACAATCAGAAGAAAATATTCGTAATTTATTTAAAGAAGCAGA 112174 Query 164688 A---GAAGAACAAAAGAAAGCAG-GTTTAGCTAGTAAATTACATGTTATTGTTTTTGATG 164743 | ||| | || ||| | || | | || ||||||| | || | || |||| Sbjct 112173 AATGGAATATAAACAGAGTGGAGAGAATTCCTT----ATTACATATAATAATATTAGATG 112118 Query 164744 AGATAGATGCTCTTTG----CAAA----AAACGTGGTGATAA-TATTATTC------ATG 164788 | || |||||| | || |||| ||| |||| || || || | ||| Sbjct 112117 AAATTGATGCTATATGTAGACAAAGAGGAAATGTGGGTTCAAGTAGTACTGGGGTAAATG 112058 Query 164789 ATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTT 164848 || || || ||||| || | |||||||| ||||| ||| | ||||||||||| Sbjct 112057 ATAGTGTCGTAAATCAATTATTATCTAAAATCGATGGAGTAAATAGTTTAAATAATATAC 111998 Query 164849 TAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTC 164908 || | | || ||||| || || |||||||| ||||| ||||| | || ||||| Sbjct 111997 TATTAATTGGAATGACAAATAGAATAGATTTAATAGATGAAGCTTTGCTTCGTCCTGGAA 111938 Query 164909 GATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAA 164968 |||| || || | ||||||||| ||||| | |||||||| | | ||||| |||| Sbjct 111937 GATTTGAGTTACATATAGAAATATCCTTACCAAATAAAGAAGGCAGAATACAAATATTAA 111878 Query 164969 AAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATA 165028 | ||||| || |||| | || ||| |||| | |||||||| || || Sbjct 111877 ATATTCATACAAAAAATATGAGAATGAGTAATAAATTAAGTTCCGATGTAAATATATTAG 111818 Query 165029 AAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 || |||| | |||| || | | ||| || ||| | || || ||||||||| Sbjct 111817 AATTAGCCGAAAGAACTCCTAACTTTTCTGGAGCAGAAATTGAAGGTTTAGTAAGA 111762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869229195200