Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq364 138 2e-27 >seq364 Length=1300438 Score = 138 bits (152), Expect = 2e-27 Identities = 424/648 (65%), Gaps = 16/648 (2%) Strand=Plus/Plus Query 193554 ATTGATCATATCTATGAGAAGATCACTCTTCATTATGGAGATCTAACTGATCCT-GTAAA 193612 |||||||| || | || ||| | | | | |||||||||||| || |||| | |||| Sbjct 606325 ATTGATCACATATTCGATAAGTTAATTTTACATTATGGAGATTTACTTGATAGTAGTAA- 606383 Query 193613 TGTTATGGGTGTCATTA----GGGCAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTC 193668 ||| || |||||| | | | | ||| ||| || ||||| | | ||| | Sbjct 606384 ---TATATGT-TCATTAATATGTGAAATAAGACCGAATGAAATATATAACTTAGCTGCGC 606439 Query 193669 AAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAG 193728 |||||||||| ||||| ||||| ||||| |||||||| | | | |||||||| Sbjct 606440 AAAGTCATGTAAAAGTAAGTTTTGAAATGCCTGAGTATACAACAGAAGCAACTGCTTTAG 606499 Query 193729 GAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCT 193788 | || | |||||| | |||| | | | || | || | ||| || || | | Sbjct 606500 GTACATTAAGAATATTAGAAGGAATAAGAATATC---AAAAGTTAAAAATATTAAATTTT 606556 Query 193789 ATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCA 193848 || | ||||| || ||| | | ||| |||| | | || | | |||| | Sbjct 606557 ATAATGCATCAACATCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAAATA 606616 Query 193849 CACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCA 193908 | |||||| ||||| || ||||||| ||||||| || |||| ||| || | | Sbjct 606617 CCCCATTTTATCCAGTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACAA 606676 Query 193909 AGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAAT 193968 |||||| | || |||||| | || | ||||||| | || ||||| ||| Sbjct 606677 TAAATTATAGAGAATCATATAATATGTTTTGTATTAATGGTATTTTATTTAATCATGAAA 606736 Query 193969 CTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCT 194028 |||||||||||| || || ||||| || | || ||||| |||| | | || || Sbjct 606737 GTCCAAGAAGAGGAGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATTGCAAAAATTC 606796 Query 194029 CTGTTGGATTACAGAAGATTCTTTATCTT-GGTAATCTTAATGCTAAGAGGGATTGGGGA 194087 |||| | || || | ||||||| |||||| | || | | || |||||||| Sbjct 606797 AAAAAAAATTAGA-AACATCCATTATCTTAGGTAATATAGATACATATAGAGATTGGGGC 606855 Query 194088 CACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGAT 194147 || || ||||||||||| | || |||| | ||||||||||| |||| | |||||| Sbjct 606856 CATGCTAAGGATTATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGAT 606915 Query 194148 TATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG-ACTTTGTGAA 194194 | ||| ||| | | |||||| ||||||| |||| | |||||||| Sbjct 606916 TTTGTTATTTGTTCGAATGAACAACATTCTGTCAGAGAATTTTGTGAA 606963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807551444868320