Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq370 228 9e-55 >seq370 Length=3208305 Score = 228 bits (252), Expect = 9e-55 Identities = 617/937 (66%), Gaps = 21/937 (2%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| || | || | | || || | ||| | | || || ||| | ||| | Sbjct 164126 ATTTAAAATTCCGTATTCAGACAAAAGACTTGATCCTTTCGTTGTGCCATGACTCCTGAT 164185 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||||||||| |||||||| || ||||| ||||| ||||||| | ||| || | Sbjct 164186 TTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAG 164245 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||| ||||||||||| || | || |||||| || || | | |||| Sbjct 164246 TCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAAT 164305 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| || |||||||||||||||||| |||| | | | ||||||| || || || Sbjct 164306 AATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATTAAA 164365 Query 21365 TTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | ||| || | | || | ||||||| |||| | || ||||| || || Sbjct 164366 TC-ACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACGAT 164424 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAAT--AATTGTTTAAACATCAAACATGCA 21481 |||| || | | ||| || | | || || ||| || | || || || | Sbjct 164425 ATTTTGTACCATT--TGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAATTA 164482 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||| ||| || |||||||| ||||| |||||||||||| |||||| |||||| | Sbjct 164483 AAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGTGT 164542 Query 21542 A-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGC 21599 | || || | | || || |||||||| |||| | |||| || || || || || | Sbjct 164543 AATTTATTTTGT-TTCTTAAACCAAAAAATTG-CACAAAAACTACCACTGAATAATATTC 164600 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTATCCAATA 21656 | ||||| ||| ||||| | || |||| | | | ||| || ||| | Sbjct 164601 CTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA------A 164654 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 |||||||| |||||||| ||| || | ||| | | || | || ||||| | | Sbjct 164655 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 164714 Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 | | || | |||| | | |||| | || |||||| ||| Sbjct 164715 ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTT 164774 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 | ||||| |||||||||| ||||| ||||| ||||| | | || || | || Sbjct 164775 CTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTT 164834 Query 21837 GAACCTCGGAATAAAATCGTTG-AGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||||| ||||| | | |||||| ||||| |||||| |||||||| || ||| Sbjct 164835 GAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCA 164893 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCT 21955 |||||||| || | || |||||||||| | || || || | ||||| | ||||| Sbjct 164894 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCT 164953 Query 21956 AATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTA 22015 |||||| | |||||||| | |||||| | ||||||||| ||| ||| || || Sbjct 164954 TTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTG 165013 Query 22016 TACATAATCCAGATATCATTATATATTATTGGAAATA 22052 || | | ||| | |||| ||||| ||||||| ||| Sbjct 165014 TAAAAATCCCAAACATCAGGATATAATATTGGATATA 165050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898326661280