Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq370 423 2e-113 >seq370 Length=3208305 Score = 423 bits (468), Expect = 2e-113 Identities = 1122/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1474475 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1474534 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62251 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1474535 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1474593 Query 62252 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 |||| | || || | | || || | || || |||| |||||| ||| || | Sbjct 1474594 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1474651 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62369 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1474652 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1474711 Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1474712 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1474771 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62489 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1474772 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1474831 Query 62490 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 62544 |||| ||||||| |||| | | || | | | || Sbjct 1474832 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1474889 Query 62545 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62603 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1474890 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1474948 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1474949 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1475008 Query 62664 AGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTA 62721 | |||| ||| | ||| ||| ||||||| |||| | ||||| | || |||| Sbjct 1475009 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1475066 Query 62722 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 62781 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1475067 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1475126 Query 62782 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 62841 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | | Sbjct 1475127 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1475186 Query 62842 CCT-TCAGTTTGAGAAAATCAAATCGCCCATCT----AT-TACAAACATGTTCAAGGCAA 62895 | | | | ||| ||| | || || | | || |||||| | || || | Sbjct 1475187 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1475246 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62955 |||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1475247 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1475306 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | | |||||||| || ||||| || ||||||| ||||| ||| ||||| | || Sbjct 1475307 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1475366 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 | ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1475367 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1475426 Query 63076 CGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATACA 63132 || |||| | | | ||| | || | ||||| ||| ||| ||||| | Sbjct 1475427 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1475483 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 || ||| || || || |||||| | || || |||||||||| |||||||| | Sbjct 1475484 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1475543 Query 63193 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63252 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1475544 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1475603 Query 63253 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63312 ||||| ||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1475604 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1475663 Query 63313 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63372 | | ||||| |||||||| ||||| | || | || | ||| ||||| || Sbjct 1475664 CAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTC 1475723 Query 63373 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63432 | || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| | Sbjct 1475724 CACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCAT 1475783 Query 63433 TTGATATACCATTGGTACCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGAT 63491 | ||||| ||||||||||| |||| || | | | | |||| | || | Sbjct 1475784 TAGATATTCCATTGGTACCTCTAATATAAGAATTTTGT-CCTCTTATATCTTGTACTGCT 1475842 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | ||| Sbjct 1475843 ACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATA 1475902 Query 63552 CCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || || ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1475903 CCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGG 1475961 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || || Sbjct 1475962 GGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATG 1476021 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | |||| ||||| || | ||| || || | | || | |||||| Sbjct 1476022 ATATGTTTCTAGAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAA 1476081 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || ||||||||||||| || || || || || || || || ||| ||||||| Sbjct 1476082 TAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAA 1476141 Query 63791 AGTTTTAAAACCAAAATA 63808 |||||||| |||||||| Sbjct 1476142 CGTTTTAAATCCAAAATA 1476159 Score = 161 bits (178), Expect = 1e-34 Identities = 278/401 (69%), Gaps = 7/401 (2%) Strand=Plus/Plus Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 164648 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATA 164707 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 164708 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 164767 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 || |||| |||||||| ||||| | || || ||||| || || | |||| || Sbjct 164768 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCC 164827 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACT 33713 || || || || ||| | |||| | | | ||||||||||| ||||| || ||||| Sbjct 164828 GTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACCATCACT 164886 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 ||||||||||| || || ||||| |||||||||| ||| || | | | | ||| | Sbjct 164887 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTC 164946 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 |||| || | ||| |||||| ||| | |||||| |||||||||| || || || || Sbjct 164947 AAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGC 165006 Query 33834 CTTTTTATACATGTTCCAGATGTC-----ATAATATTGGAT 33869 || || || | | ||| | || |||||||||||| Sbjct 165007 TTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGAT 165047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944303295520