Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq370 259 1e-63 seq360 122 2e-22 >seq370 Length=3208305 Score = 259 bits (286), Expect = 1e-63 Identities = 614/918 (67%), Gaps = 20/918 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| ||| |||| | ||| || ||| ||||| ||| | | Sbjct 1476165 TATGATTATTTTGGATTTAAAACGTTGGAAAGATCTTATTTATTACGTATTAATAATAAA 1476106 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||| | || || ||| | |||||| | ||| |||||||||| ||| || Sbjct 1476105 ATTATTGAAAGACCTCAACATTTATTAATGAGAGTTTCTATTGGTATACATATAGATGAC 1476046 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 | ||| || | ||||||||| | | ||| ||| || | || || || Sbjct 1476045 ATAGATAAAGCTCTAGAAACATATCA---TTTAATGTCTCAGAAATATTTTACCCATGCA 1475989 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| ||| ||| | ||||| | | ||||| ||||||||||| |||||| | Sbjct 1475988 ACTCCTACATTGTTTAATTCAGGAACCCCAAGACCACAAATGTCTTCTTG-TTTCTTGTT 1475930 Query 363619 AA-AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | |||||| | ||||| || || ||||| ||||| || || || | |||||| | || Sbjct 1475929 ATCAATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACGCTAAAACAATGTGCTTTAAT 1475870 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTA 363737 | || | |||||| || ||||||||| | | || || | | | ||| || ||| Sbjct 1475869 TAGTAAAACTGCAGGAGGTATTGGTGTAGCAGTACAAGATATAAGAGGACAAAATTCTTA 1475810 Query 363738 CATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||| | || || | || ||| || ||||| | || || ||| | | || ||| | Sbjct 1475809 TATTAGAGGTACCAATGGAATA-TCTAATGGTTTAGTACCTATGTTAAGAGTTTTTAATG 1475751 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 ||||||| || || || || || ||||||||||| || || || |||||||| | ||| Sbjct 1475750 ATACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAGGGATCGTTTGCTGTTTATA 1475691 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | || || ||| | ||||| ||||| ||| | || | | || ||| ||||||| Sbjct 1475690 TTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGAAAGAACCATGGAAAAG 1475631 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 | ||||| | ||||| ||| | || ||||| | |||||| |||| | |||||||||| Sbjct 1475630 AAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGATCTTTTTATGAAGA 1475571 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || | | | ||| |||||| || | | || ||| | |||||||||||| | | Sbjct 1475570 GAGTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTG 1475511 Query 364037 ATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAA--- 364091 | |||||||| || | || | ||||| ||| |||||| || | ||| Sbjct 1475510 AAACTTGGGGTGAAGAATTTGAAAAATTATATACTAAA--TATGAA---GAAGAAAATAT 1475456 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || || ||| ||| || || | |||||||||| || | | || || || Sbjct 1475455 GGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGA 1475396 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 |||||| ||| |||||| | || |||||||| || || || ||||| ||| | | Sbjct 1475395 AACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAATCAGAAAAA 1475336 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 | ||||| ||| | || ||| ||||| || ||||| ||||| ||| |||| || Sbjct 1475335 TTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACCTCTCCTGA 1475276 Query 364272 CGAGACTGCCGTATGTAA 364289 || ||| |||||||| Sbjct 1475275 TGAAGTTGCTGTATGTAA 1475258 >seq360 Length=1059361 Score = 122 bits (134), Expect = 2e-22 Identities = 380/583 (65%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| ||| | | || |||||| | || || | |||||| | |||||| | || | Sbjct 670456 ATTTCCCATTATTAACTACAAAGAAATTATTTTTAAGAGGAATTATTGAAGAATTGCTTT 670515 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-AATGTAAAAATTTGG 111431 |||||||| | ||| ||||||| ||| | ||| | || ||||||| || ||| Sbjct 670516 GGTTTATTAGAGGAGAAACAAATGGTAAT-ACGTTGTTAAATAAGAATGTAAGGATATGG 670574 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTC-AGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||| | | || ||| ||||| || | | || | | |||| Sbjct 670575 GAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAATTATTTC-ATAGAGAAGTTAA 670633 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||| | ||||| |||| || ||||||||| | || || ||||| || || | || || Sbjct 670634 CGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAATAT 670693 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 | | || ||||| | ||| ||||||||| | ||| | || || |||||| Sbjct 670694 GTATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATTAA 670753 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | || || | | | ||| || || |||||||||| ||| | | || | Sbjct 670754 AAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCA 670813 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||| | || || |||||| || | || ||||||||||| ||| |||| | || Sbjct 670814 AATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATTATC 670873 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||| |||| |||| | || || || || || ||||||||||| Sbjct 670874 ATGTATTATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTC 670933 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | | ||||| | || || || | ||| | |||| | | ||||| Sbjct 670934 TTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCGCAGTTCAT 670993 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGAT 111893 |||||| | ||| |||| |||||||| | || ||||||||| Sbjct 670994 ACACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGAT 671036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347387890904