Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq369 127 2e-24 seq368 114 1e-20 >seq369 Length=2804353 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || ||||||||| | |||||||||||||||||||||||| | |||||| | || || || Sbjct 2577111 AAGAAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGA- 2577053 Query 24045 GCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 |||| | || || || ||| | || || ||| ||| || |||||||| || ||||| Sbjct 2577052 GCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCC 2576993 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 |||||||| ||| | || | | || || ||| | ||||||| || | | | || Sbjct 2576992 TGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGA 2576933 Query 24164 TTATAACATTCAAAAAGAATCTAC 24187 |||||| |||||||| |||||||| Sbjct 2576932 TTATAATATTCAAAAGGAATCTAC 2576909 >seq368 Length=2153551 Score = 114 bits (126), Expect = 1e-20 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAA 24076 |||||| | || ||| | || |||||| ||| | |||||||| ||| | || || ||| Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGAG-CCATCTGACACCATTGAGAATGTTAAGGCAAA 464456 Query 24077 GATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||| || |||||||| || || || || ||||| ||| | || | | || || || Sbjct 464457 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 464516 Query 24137 ACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATT 24195 | | ||||||| |||| | | | | ||||| || |||||||| ||||||||| | || | Sbjct 464517 ATTAGAAGATGGAAGAA-CTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACT 464575 Query 24196 TAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 ||||||||||||| ||||| || | |||| ||| Sbjct 464576 TAGTGTTAAGATTAAGAGGTGGTTTTTAATTATT 464609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934050777660