Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq370 233 2e-56 >seq370 Length=3208305 Score = 233 bits (258), Expect = 2e-56 Identities = 594/890 (67%), Gaps = 23/890 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| || || ||||||| || || | ||| |||| ||||| || ||||| ||||||| Sbjct 164173 CATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTG 164232 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | || || | | || | | | | |||||| |||| | || | ||| | | Sbjct 164233 AAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAA-ATTTTAGAGCATC 164291 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAA 92965 | | | | | |||||||||||||| ||||||||||| || |||||||| || || | || Sbjct 164292 CTAAACATTCTAATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAA 164350 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 |||||||||| | | ||| |||| | || | ||| | | || | | | || Sbjct 164351 TTCATTCCTATTAAATC-ACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTAC 164409 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 |||||||| | ||| | | ||| | | ||| |||| | | | || | || Sbjct 164410 AGCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATA 164469 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 |||||||| ||| || |||||||| ||||| |||| || || ||||| || || Sbjct 164470 AATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAA 164529 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 ||| ||||| |||| | ||||||| | |||||| |||| | |||||||||| Sbjct 164530 TGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACT 164589 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 || ||||| ||||| || |||| || ||||| | ||| ||||| ||||| Sbjct 164590 GAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAAC------GAATT 164643 Query 93265 ACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | | ||||||||| ||||| ||||| || || | ||| | |||| Sbjct 164644 AGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTC 164703 Query 93322 GATAGCGTTAAATAGGT--AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| | ||||| | ||||| || | | |||| || || |||| ||||| Sbjct 164704 TATAGCATGAAATAAATTTAATCTTTCTTTTTC--ATCTTTAATATAATTATCAATTAAT 164761 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | | ||| |||| ||||| | ||| || | || ||||| || || || | || Sbjct 164762 AAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTA 164821 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATACC 93498 |||||||| || || || ||| |||| || ||| | | |||||| |||||||| Sbjct 164822 GCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTATACC 164880 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| |||||||||||| || || | ||||||||||||||||||||||| || || | Sbjct 164881 ATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAA 164940 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || || |||| || ||| | || | ||| | |||||| | |||||||| || || Sbjct 164941 TTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGC 165000 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 ||| ||||| ||||| | |||||| | || ||||| |||||| ||| Sbjct 165001 TTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATA 165050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858210597280