Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq369 131 1e-25 seq368 107 2e-18 seq370 86.0 5e-12 >seq369 Length=2804353 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| ||||| ||||| || ||||| | || ||||| || || | Sbjct 2577108 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2577049 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || |||||||||||| || || || ||||| || ||| Sbjct 2577048 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2576989 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | |||||||| || ||||| ||||| ||| | ||| | || ||||| Sbjct 2576988 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2576929 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| ||||| || |||| || || Sbjct 2576928 AATATTCAAAAGGAATCTACTTTACACTTGGT 2576897 >seq368 Length=2153551 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| | || ||||| || || | | || ||| | || || | || |||| Sbjct 464398 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 464457 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || || |||||||| || |||||| | | |||||||| || ||||| Sbjct 464458 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACAA 464517 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| ||| | || | || |||||||| |||||||| ||||| || |||| ||| Sbjct 464518 TTAGAAGATGGAAGAACTTTATCAGATTACAATATTCAAAAGGAATCTACATTACACTTA 464577 Query 22426 GTTTTGCGATTGCGCGGAGGTTTTCCATTTTAAAATTATATT 22467 || || |||| | || |||||| ||| | | |||| || Sbjct 464578 GTGTTAAGATTAAGAGGTGGTTTTTAATTATTTATTTATTTT 464619 >seq370 Length=3208305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 234/354 (66%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 129504 AAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTT 129563 |||||| || || || ||||||| ||| | ||| || || | |||| | |||| ||| | Sbjct 1475053 AAATGTATCTGCTAATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGT 1475112 Query 129564 TTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAA-TTCTTGACCA 129622 || ||| | ||||| || || | ||||||||||| | |||| |||||| | Sbjct 1475113 TTTTGCTTCTTTGACTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTG-TAA 1475171 Query 129623 CAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAA 129682 |||||| || | | | |||| ||| ||||||| | || | || | || |||| Sbjct 1475172 TAATTTTGGTAATTTCATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAA 1475231 Query 129683 ATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACT 129742 ||| | | | || || |||||||| || || ||| ||| | | || | Sbjct 1475232 ATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATT 1475291 Query 129743 CGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACT 129800 ||| |||||| || || |||||| |||||| || ||||||| || ||||| | | Sbjct 1475292 CGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATT 1475351 Query 129801 TTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || || || |||| |||||| || | ||| || || || ||||| | ||| Sbjct 1475352 TTGCA--TTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTG 1475403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726097058180