Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq364 91.5 3e-13 seq369 89.7 1e-12 >seq364 Length=1300438 Score = 91.5 bits (100), Expect = 3e-13 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 || || || | ||||||||| ||| | ||| | |||||||| || |||||||| Sbjct 606571 TCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAAATACCCCATTTTATCCA 606630 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548 | |||||| | | ||||| || || || ||| || | |||||| | || Sbjct 606631 GTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACAATAAATTATAGAGAA 606690 Query 72549 TCGTATAACATGTAT-GTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 72607 || ||||| |||| | |||| || |||| || ||||| || ||||| | ||||| Sbjct 606691 TCATATAATATGTTTTGTATT-AATGGTATTTTATTTAATCATGAAAGTCCAAGAAGAGG 606749 Query 72608 CCATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTGTCG 72666 | ||| || || | ||||| || | |||| | || || ||| || | | Sbjct 606750 AGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATT-GCAAAAATTCAAAAAAAATTAG 606808 Query 72667 AAAAATGCATGTATCTC-GGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGAT 72725 ||| || ||| ||||| |||||||||||| | | ||||||||||| |||| |||||| Sbjct 606809 AAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATTGGGGCCATGCTAAGGAT 606867 Query 72726 TACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATT 72782 || ||| | || |||| | ||| |||||||| || | ||||| | ||| ||| Sbjct 606868 TATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGATTTTGTTATT 606924 >seq369 Length=2804353 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | | || | ||| ||||||||||||||||| || || Sbjct 2576914 TTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCAGCAAA 2576973 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| || ||||| || || || || Sbjct 2576974 TATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATT 2577033 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | || || || || || || || || || || | || || || Sbjct 2577034 CTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTTTTTAC 2577093 Query 288462 GAATATCTGCATTATGTTA 288480 || || |||||| | ||| Sbjct 2577094 AAAAATTTGCATTTTCTTA 2577112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648777472216