Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq364 91.5 3e-13 >seq364 Length=1300438 Score = 91.5 bits (100), Expect = 3e-13 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 || || || | ||||||||| ||| | ||| | |||||||| || |||||||| Sbjct 606571 TCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAAATACCCCATTTTATCCA 606630 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 68537 | |||||| | | ||||| || || || ||| || | |||||| | || Sbjct 606631 GTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACAATAAATTATAGAGAA 606690 Query 68538 TCGTATAACATGTAT-GTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 68596 || ||||| |||| | |||| || |||| || ||||| || ||||| | ||||| Sbjct 606691 TCATATAATATGTTTTGTATT-AATGGTATTTTATTTAATCATGAAAGTCCAAGAAGAGG 606749 Query 68597 CCATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTGTCG 68655 | ||| || || | ||||| || | |||| | || || ||| || | | Sbjct 606750 AGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATT-GCAAAAATTCAAAAAAAATTAG 606808 Query 68656 AAAAATGCATGTATCTC-GGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGAT 68714 ||| || ||| ||||| |||||||||||| | | ||||||||||| |||| |||||| Sbjct 606809 AAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATTGGGGCCATGCTAAGGAT 606867 Query 68715 TACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATT 68771 || ||| | || |||| | ||| |||||||| || | ||||| | ||| ||| Sbjct 606868 TATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGATTTTGTTATT 606924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874743398200