Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq369 109 5e-19 seq370 87.8 2e-12 >seq369 Length=2804353 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| || ||||||| | ||| | | ||||| | || || || Sbjct 2576909 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2576968 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | || || || ||||||||||||||||| ||||| |||||| ||| Sbjct 2576969 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2577028 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || || || | || | ||| || || || || ||| Sbjct 2577029 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2577088 Query 64427 TTTACGAAAATTTGCATTTT 64446 ||||| |||||||||||||| Sbjct 2577089 TTTACAAAAATTTGCATTTT 2577108 >seq370 Length=3208305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 320/494 (65%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| ||||| || || || |||| ||| |||| | | |||| | |||||| || Sbjct 1475248 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1475307 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || ||||| ||| ||| || |||| ||||||||||| ||||| || || | || Sbjct 1475308 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATC 1475367 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765 ||| || | || || || || ||||| | |||| ||| |||| || || || Sbjct 1475368 TTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTG--TAATATAGCAAACCAT 1475425 Query 154766 ACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 | || | || |||| | |||||| ||||||| || | | Sbjct 1475426 AAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1475485 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGAC--AAACCGGGACAGCGGTCGGGACACATCA 154881 |||||||| ||| || || || || ||||| ||||| | |||||||| | Sbjct 1475486 TTTTCAAATTCTTCACCC--CAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1475543 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 ||| ||| ||| |||| || || | |||||||| | ||| || ||||| | ||| | Sbjct 1475544 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1475603 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCT-TTAAATTCAAAAAA 155000 | || ||||| || || || ||||| || ||| ||| | |||||| ||||| Sbjct 1475604 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCC-ATGGTTCTTTCTTAAATCTAAAAAT 1475662 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCT 155060 ||| |||| || | ||||| || || | ||| || || | || || || ||||||||| Sbjct 1475663 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCT 1475722 Query 155061 ---CCTTGATCCAC 155071 |||||||| || Sbjct 1475723 CCACCTTGATCTAC 1475736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642476651680