Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq368 104 2e-17 seq369 102 6e-17 >seq368 Length=2153551 Score = 104 bits (114), Expect = 2e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||| ||||| || | ||||| || ||||| || |||||||| || Sbjct 464597 CCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATC--TG 464540 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | |||||||||||||| ||||| |||| || | |||||||| || Sbjct 464539 ATAAAGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTG 464480 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || |||||| || ||| | || || || || || | Sbjct 464479 GAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGA 464420 Query 15128 CGTCTAAGGTAATGGTTTTACCT 15150 |||| | ||| || ||||| ||| Sbjct 464419 CGTCAAGGGTTATAGTTTTTCCT 464397 >seq369 Length=2804353 Score = 102 bits (112), Expect = 6e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGC 15037 ||||| || ||||| || || ||||| ||| || | || | |||||||||||||| | Sbjct 2576909 GTAGATTCCTTTTGAATATTATAATC--TGATAAGGTCCTTCCATCTTCTAATTGTTTTC 2576966 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| |||| || | ||||| || ||||||||||| || || |||||| | Sbjct 2576967 CAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCT 2577026 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| | || || ||||| || || || | |||||||||||| || || | | Sbjct 2577027 TAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATG 2577086 Query 15158 TTTTTACAAAAATTTGCATATT 15179 ||||||||||||||||||| || Sbjct 2577087 TTTTTACAAAAATTTGCATTTT 2577108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390379674020