Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq369 131 2e-25 seq368 109 5e-19 seq370 91.5 1e-13 >seq369 Length=2804353 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||||||||| ||||||||||| | ||| | ||| || ||||||||||| Sbjct 2576909 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2576968 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| ||| || || || ||||| ||||||||||||||||||||| || Sbjct 2576969 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2577028 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | || || || | ||| || || || |||| ||||| || |||| ||| Sbjct 2577029 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2577088 Query 45324 TTTACAAAAATTTGCAT 45340 ||||||||||||||||| Sbjct 2577089 TTTACAAAAATTTGCAT 2577105 >seq368 Length=2153551 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| || | || ||||||||||| ||||| ||||| | ||| | | Sbjct 464585 CTTAACACTAAGTGTAATGTAGATTCCTTTTGAATATTGTAATCTGATAAAGTTCTTCCA 464526 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || |||| |||| ||| ||||| || ||||| ||||||||| Sbjct 464525 TCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTA 464466 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| || | || | |||||| || | |||||| || || || | Sbjct 464465 TCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATA 464406 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 464405 GTTTTTCC 464398 >seq370 Length=3208305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| ||| || || ||||| || ||||| | || || ||| ||||| Sbjct 1475403 CAAATAGAAACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAAT 1475344 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 |||| || ||||| || || ||||||||||| | || | |||||||||||||| | | Sbjct 1475343 CAGAAAAATTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACC 1475284 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | ||| |||| || || ||||||||||| || || Sbjct 1475283 TCTCCTGATGAAGTTGCTGTATGTAATTTGGCATCTAT 1475246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001098185120